Experiment: Succinic Acid; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0224 and Rru_A0225 overlap by 4 nucleotides Rru_A0225 and Rru_A0226 are separated by 23 nucleotides Rru_A0226 and Rru_A0227 are separated by 116 nucleotides Rru_A0227 and Rru_A0228 overlap by 4 nucleotides
Rru_A0224: Rru_A0224 - Protein of unknown function DUF160 (NCBI), at 276,621 to 277,595
_A0224
Rru_A0225: Rru_A0225 - Metal dependent phosphohydrolase, HD region (NCBI), at 277,592 to 278,266
_A0225
Rru_A0226: Rru_A0226 - Major facilitator superfamily MFS_1 (NCBI), at 278,290 to 279,630
_A0226
Rru_A0227: Rru_A0227 - hypothetical protein (NCBI), at 279,747 to 280,085
_A0227
Rru_A0228: Rru_A0228 - Twin-arginine translocation pathway signal (NCBI), at 280,082 to 280,984
_A0228
Position (kb) 278
279
280 Strain fitness (log2 ratio) -2
-1
0
1
2 at 277.495 kb on + strand, within Rru_A0224 at 277.496 kb on - strand, within Rru_A0224 at 277.936 kb on - strand, within Rru_A0225 at 277.936 kb on - strand, within Rru_A0225 at 277.936 kb on - strand, within Rru_A0225 at 278.481 kb on + strand, within Rru_A0226 at 278.482 kb on - strand, within Rru_A0226 at 278.482 kb on - strand, within Rru_A0226 at 278.482 kb on - strand, within Rru_A0226 at 278.482 kb on - strand, within Rru_A0226 at 278.484 kb on - strand, within Rru_A0226 at 278.592 kb on + strand, within Rru_A0226 at 278.594 kb on + strand, within Rru_A0226 at 278.595 kb on - strand, within Rru_A0226 at 278.963 kb on + strand, within Rru_A0226 at 278.964 kb on - strand, within Rru_A0226 at 278.964 kb on - strand, within Rru_A0226 at 279.026 kb on + strand, within Rru_A0226 at 279.026 kb on + strand, within Rru_A0226 at 279.027 kb on - strand, within Rru_A0226 at 279.027 kb on - strand, within Rru_A0226 at 279.135 kb on - strand, within Rru_A0226 at 279.135 kb on - strand, within Rru_A0226 at 279.135 kb on - strand, within Rru_A0226 at 279.135 kb on - strand, within Rru_A0226 at 279.212 kb on + strand, within Rru_A0226 at 279.225 kb on + strand, within Rru_A0226 at 279.225 kb on + strand, within Rru_A0226 at 279.226 kb on - strand, within Rru_A0226 at 279.226 kb on - strand, within Rru_A0226 at 279.227 kb on + strand, within Rru_A0226 at 279.227 kb on + strand, within Rru_A0226 at 279.227 kb on + strand, within Rru_A0226 at 279.228 kb on - strand, within Rru_A0226 at 279.228 kb on - strand, within Rru_A0226 at 279.228 kb on - strand, within Rru_A0226 at 279.228 kb on - strand, within Rru_A0226 at 279.228 kb on - strand, within Rru_A0226 at 279.270 kb on + strand, within Rru_A0226 at 279.480 kb on - strand, within Rru_A0226 at 279.480 kb on - strand, within Rru_A0226 at 279.482 kb on + strand, within Rru_A0226 at 279.820 kb on + strand, within Rru_A0227 at 279.820 kb on + strand, within Rru_A0227 at 279.821 kb on - strand, within Rru_A0227 at 279.821 kb on - strand, within Rru_A0227 at 279.841 kb on + strand, within Rru_A0227 at 279.841 kb on + strand, within Rru_A0227 at 280.171 kb on + strand at 280.171 kb on + strand at 280.171 kb on + strand at 280.171 kb on + strand at 280.171 kb on + strand at 280.171 kb on + strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.172 kb on - strand at 280.173 kb on + strand, within Rru_A0228 at 280.173 kb on + strand, within Rru_A0228 at 280.173 kb on + strand, within Rru_A0228 at 280.173 kb on + strand, within Rru_A0228 at 280.174 kb on - strand, within Rru_A0228 at 280.174 kb on - strand, within Rru_A0228 at 280.174 kb on - strand, within Rru_A0228 at 280.174 kb on - strand, within Rru_A0228 at 280.487 kb on - strand, within Rru_A0228
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 38 uM remove 277,495 + Rru_A0224 0.90 +0.0 277,496 - Rru_A0224 0.90 +0.0 277,936 - Rru_A0225 0.51 -0.1 277,936 - Rru_A0225 0.51 +0.0 277,936 - Rru_A0225 0.51 +0.8 278,481 + Rru_A0226 0.14 +0.0 278,482 - Rru_A0226 0.14 +0.0 278,482 - Rru_A0226 0.14 +0.0 278,482 - Rru_A0226 0.14 +1.3 278,482 - Rru_A0226 0.14 +0.0 278,484 - Rru_A0226 0.14 +1.3 278,592 + Rru_A0226 0.23 +0.0 278,594 + Rru_A0226 0.23 +0.0 278,595 - Rru_A0226 0.23 +0.8 278,963 + Rru_A0226 0.50 -2.0 278,964 - Rru_A0226 0.50 +0.0 278,964 - Rru_A0226 0.50 -0.8 279,026 + Rru_A0226 0.55 +0.0 279,026 + Rru_A0226 0.55 +1.0 279,027 - Rru_A0226 0.55 -1.6 279,027 - Rru_A0226 0.55 +1.4 279,135 - Rru_A0226 0.63 -0.2 279,135 - Rru_A0226 0.63 +0.0 279,135 - Rru_A0226 0.63 +0.9 279,135 - Rru_A0226 0.63 +0.0 279,212 + Rru_A0226 0.69 +0.0 279,225 + Rru_A0226 0.70 +0.5 279,225 + Rru_A0226 0.70 +0.0 279,226 - Rru_A0226 0.70 +0.0 279,226 - Rru_A0226 0.70 +0.0 279,227 + Rru_A0226 0.70 +0.0 279,227 + Rru_A0226 0.70 +0.7 279,227 + Rru_A0226 0.70 +0.0 279,228 - Rru_A0226 0.70 +1.4 279,228 - Rru_A0226 0.70 +0.0 279,228 - Rru_A0226 0.70 +1.6 279,228 - Rru_A0226 0.70 +1.6 279,228 - Rru_A0226 0.70 +1.9 279,270 + Rru_A0226 0.73 +0.7 279,480 - Rru_A0226 0.89 +1.4 279,480 - Rru_A0226 0.89 +0.0 279,482 + Rru_A0226 0.89 +0.0 279,820 + Rru_A0227 0.22 +1.4 279,820 + Rru_A0227 0.22 +0.0 279,821 - Rru_A0227 0.22 +0.0 279,821 - Rru_A0227 0.22 +0.0 279,841 + Rru_A0227 0.28 +0.0 279,841 + Rru_A0227 0.28 -0.2 280,171 + +0.0 280,171 + -1.0 280,171 + +1.3 280,171 + +0.0 280,171 + +1.0 280,171 + +0.3 280,172 - +0.5 280,172 - +0.6 280,172 - +1.0 280,172 - +1.8 280,172 - +0.0 280,172 - +1.5 280,172 - +0.0 280,173 + Rru_A0228 0.10 +0.0 280,173 + Rru_A0228 0.10 +0.9 280,173 + Rru_A0228 0.10 +0.4 280,173 + Rru_A0228 0.10 +0.6 280,174 - Rru_A0228 0.10 +0.9 280,174 - Rru_A0228 0.10 +0.7 280,174 - Rru_A0228 0.10 +0.5 280,174 - Rru_A0228 0.10 +0.0 280,487 - Rru_A0228 0.45 +1.3
Or see this region's nucleotide sequence