Experiment: Succinic Acid; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0009 and Rru_B0010 are separated by 718 nucleotides Rru_B0010 and Rru_B0011 are separated by 12 nucleotides Rru_B0011 and Rru_B0012 are separated by 60 nucleotides Rru_B0012 and Rru_B0013 are separated by 183 nucleotides
Rru_B0009: Rru_B0009 - Transposase, mutator type (NCBI), at 10,834 to 11,760
_B0009
Rru_B0010: Rru_B0010 - Resolvase (NCBI), at 12,479 to 13,036
_B0010
Rru_B0011: Rru_B0011 - Protein of unknown function DUF86 (NCBI), at 13,049 to 13,348
_B0011
Rru_B0012: Rru_B0012 - DNA polymerase, beta-like region (NCBI), at 13,409 to 13,675
_B0012
Rru_B0013: Rru_B0013 - hypothetical protein (NCBI), at 13,859 to 14,095
_B0013
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 11.854 kb on + strand at 11.855 kb on - strand at 11.855 kb on - strand at 11.895 kb on + strand at 11.896 kb on - strand at 11.896 kb on - strand at 11.896 kb on - strand at 11.938 kb on + strand at 11.947 kb on + strand at 11.948 kb on - strand at 11.980 kb on + strand at 11.980 kb on + strand at 11.980 kb on + strand at 11.980 kb on + strand at 12.009 kb on + strand at 12.009 kb on + strand at 12.009 kb on + strand at 12.010 kb on - strand at 12.010 kb on - strand at 12.010 kb on - strand at 12.010 kb on - strand at 12.107 kb on - strand at 12.107 kb on - strand at 12.107 kb on - strand at 12.107 kb on - strand at 12.138 kb on + strand at 12.139 kb on - strand at 12.142 kb on - strand at 12.155 kb on - strand at 12.179 kb on - strand at 12.194 kb on + strand at 12.261 kb on + strand at 12.262 kb on - strand at 12.287 kb on + strand at 12.298 kb on - strand at 12.298 kb on - strand at 12.300 kb on + strand at 12.301 kb on - strand at 12.301 kb on - strand at 12.365 kb on + strand at 12.365 kb on + strand at 12.366 kb on - strand at 12.406 kb on - strand at 12.475 kb on + strand at 12.475 kb on + strand at 12.475 kb on + strand at 12.475 kb on + strand at 12.476 kb on - strand at 12.476 kb on - strand at 12.476 kb on - strand at 12.481 kb on - strand at 12.481 kb on - strand at 12.510 kb on + strand at 12.510 kb on + strand at 12.511 kb on - strand at 12.511 kb on - strand at 12.511 kb on - strand at 12.511 kb on - strand at 12.517 kb on + strand at 12.517 kb on + strand at 12.517 kb on + strand at 12.518 kb on - strand at 12.554 kb on - strand, within Rru_B0010 at 12.601 kb on + strand, within Rru_B0010 at 12.671 kb on - strand, within Rru_B0010 at 12.757 kb on + strand, within Rru_B0010 at 12.757 kb on + strand, within Rru_B0010 at 12.758 kb on - strand, within Rru_B0010 at 12.881 kb on + strand, within Rru_B0010 at 12.882 kb on - strand, within Rru_B0010 at 12.882 kb on - strand, within Rru_B0010 at 12.882 kb on - strand, within Rru_B0010 at 12.882 kb on - strand, within Rru_B0010 at 12.937 kb on + strand, within Rru_B0010 at 13.164 kb on + strand, within Rru_B0011 at 13.164 kb on + strand, within Rru_B0011 at 13.164 kb on + strand, within Rru_B0011 at 13.164 kb on + strand, within Rru_B0011 at 13.165 kb on - strand, within Rru_B0011 at 13.183 kb on + strand, within Rru_B0011 at 13.184 kb on - strand, within Rru_B0011 at 13.184 kb on - strand, within Rru_B0011 at 13.242 kb on + strand, within Rru_B0011 at 13.243 kb on - strand, within Rru_B0011 at 13.288 kb on + strand, within Rru_B0011 at 13.288 kb on + strand, within Rru_B0011 at 13.288 kb on + strand, within Rru_B0011 at 13.288 kb on + strand, within Rru_B0011 at 13.288 kb on + strand, within Rru_B0011 at 13.288 kb on + strand, within Rru_B0011 at 13.289 kb on - strand, within Rru_B0011 at 13.289 kb on - strand, within Rru_B0011 at 13.289 kb on - strand, within Rru_B0011 at 13.292 kb on - strand, within Rru_B0011 at 13.292 kb on - strand, within Rru_B0011 at 13.292 kb on - strand, within Rru_B0011 at 13.292 kb on - strand, within Rru_B0011 at 13.338 kb on - strand at 13.392 kb on + strand at 13.392 kb on + strand at 13.392 kb on + strand at 13.393 kb on - strand at 13.412 kb on + strand at 13.412 kb on + strand at 13.412 kb on + strand at 13.412 kb on + strand at 13.412 kb on + strand at 13.413 kb on - strand at 13.413 kb on - strand at 13.413 kb on - strand at 13.413 kb on - strand at 13.413 kb on - strand at 13.540 kb on + strand, within Rru_B0012 at 13.540 kb on + strand, within Rru_B0012 at 13.540 kb on + strand, within Rru_B0012 at 13.540 kb on + strand, within Rru_B0012 at 13.540 kb on + strand, within Rru_B0012 at 13.540 kb on + strand, within Rru_B0012 at 13.540 kb on + strand, within Rru_B0012 at 13.541 kb on - strand, within Rru_B0012 at 13.541 kb on - strand, within Rru_B0012 at 13.541 kb on - strand, within Rru_B0012 at 13.541 kb on - strand, within Rru_B0012 at 13.541 kb on - strand, within Rru_B0012 at 13.541 kb on - strand, within Rru_B0012 at 13.541 kb on - strand, within Rru_B0012 at 13.647 kb on - strand, within Rru_B0012 at 13.687 kb on + strand at 13.687 kb on + strand at 13.688 kb on - strand at 13.688 kb on - strand at 13.688 kb on - strand at 13.688 kb on - strand at 13.688 kb on - strand at 13.688 kb on - strand at 13.688 kb on - strand at 13.688 kb on - strand at 13.688 kb on - strand at 13.714 kb on - strand at 13.735 kb on - strand at 13.735 kb on - strand at 13.763 kb on + strand at 13.763 kb on + strand at 13.764 kb on - strand at 13.764 kb on - strand at 13.848 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 38 uM remove 11,854 + +1.0 11,855 - +0.9 11,855 - -2.0 11,895 + +0.0 11,896 - +0.0 11,896 - -1.6 11,896 - +0.5 11,938 + -1.0 11,947 + +1.3 11,948 - -1.6 11,980 + +0.0 11,980 + +0.0 11,980 + +0.0 11,980 + +0.0 12,009 + +1.1 12,009 + +1.0 12,009 + -1.6 12,010 - -1.0 12,010 - -1.0 12,010 - +0.7 12,010 - -0.1 12,107 - +0.2 12,107 - +0.0 12,107 - -1.0 12,107 - +0.8 12,138 + +1.1 12,139 - +1.1 12,142 - +0.0 12,155 - +0.0 12,179 - +1.3 12,194 + +0.9 12,261 + +1.5 12,262 - +0.4 12,287 + +0.6 12,298 - +0.0 12,298 - +1.1 12,300 + +0.2 12,301 - +0.1 12,301 - +1.2 12,365 + +1.7 12,365 + +0.0 12,366 - +1.1 12,406 - +0.0 12,475 + +0.5 12,475 + +0.0 12,475 + +0.0 12,475 + +0.3 12,476 - +1.0 12,476 - +0.1 12,476 - +0.0 12,481 - -0.7 12,481 - +0.0 12,510 + -0.1 12,510 + +0.8 12,511 - +0.0 12,511 - +0.5 12,511 - +1.2 12,511 - +0.0 12,517 + -0.5 12,517 + +0.0 12,517 + +0.5 12,518 - -1.6 12,554 - Rru_B0010 0.13 +0.2 12,601 + Rru_B0010 0.22 +1.3 12,671 - Rru_B0010 0.34 -1.0 12,757 + Rru_B0010 0.50 +0.9 12,757 + Rru_B0010 0.50 +0.0 12,758 - Rru_B0010 0.50 +0.8 12,881 + Rru_B0010 0.72 +0.0 12,882 - Rru_B0010 0.72 +0.0 12,882 - Rru_B0010 0.72 -0.2 12,882 - Rru_B0010 0.72 -0.7 12,882 - Rru_B0010 0.72 +0.0 12,937 + Rru_B0010 0.82 +0.3 13,164 + Rru_B0011 0.38 +0.0 13,164 + Rru_B0011 0.38 +0.6 13,164 + Rru_B0011 0.38 +1.1 13,164 + Rru_B0011 0.38 -1.0 13,165 - Rru_B0011 0.39 +1.2 13,183 + Rru_B0011 0.45 +1.2 13,184 - Rru_B0011 0.45 +1.7 13,184 - Rru_B0011 0.45 +1.2 13,242 + Rru_B0011 0.64 -1.0 13,243 - Rru_B0011 0.65 -1.0 13,288 + Rru_B0011 0.80 +0.0 13,288 + Rru_B0011 0.80 -1.0 13,288 + Rru_B0011 0.80 +0.5 13,288 + Rru_B0011 0.80 +0.5 13,288 + Rru_B0011 0.80 +0.0 13,288 + Rru_B0011 0.80 +0.9 13,289 - Rru_B0011 0.80 +1.6 13,289 - Rru_B0011 0.80 +0.6 13,289 - Rru_B0011 0.80 +0.9 13,292 - Rru_B0011 0.81 +0.0 13,292 - Rru_B0011 0.81 +0.6 13,292 - Rru_B0011 0.81 +0.5 13,292 - Rru_B0011 0.81 +0.7 13,338 - +0.5 13,392 + +0.0 13,392 + +0.0 13,392 + +0.0 13,393 - +0.9 13,412 + +1.0 13,412 + +0.0 13,412 + +0.3 13,412 + +0.3 13,412 + -0.4 13,413 - +0.0 13,413 - +0.0 13,413 - -2.0 13,413 - +0.0 13,413 - +2.0 13,540 + Rru_B0012 0.49 +0.9 13,540 + Rru_B0012 0.49 -1.0 13,540 + Rru_B0012 0.49 +0.0 13,540 + Rru_B0012 0.49 -0.1 13,540 + Rru_B0012 0.49 +0.0 13,540 + Rru_B0012 0.49 +1.0 13,540 + Rru_B0012 0.49 +1.4 13,541 - Rru_B0012 0.49 +1.5 13,541 - Rru_B0012 0.49 -0.1 13,541 - Rru_B0012 0.49 +0.0 13,541 - Rru_B0012 0.49 -0.2 13,541 - Rru_B0012 0.49 +0.7 13,541 - Rru_B0012 0.49 +0.5 13,541 - Rru_B0012 0.49 +0.5 13,647 - Rru_B0012 0.89 -0.1 13,687 + +0.0 13,687 + +0.0 13,688 - +0.7 13,688 - +0.0 13,688 - -0.4 13,688 - +0.0 13,688 - +0.0 13,688 - +1.0 13,688 - -0.1 13,688 - -1.0 13,688 - +0.0 13,714 - +0.0 13,735 - -1.0 13,735 - +1.3 13,763 + +0.4 13,763 + +0.9 13,764 - +1.6 13,764 - +1.0 13,848 + +1.5
Or see this region's nucleotide sequence