Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_4024 and Ga0059261_4025 overlap by 4 nucleotides Ga0059261_4025 and Ga0059261_4026 overlap by 8 nucleotides Ga0059261_4026 and Ga0059261_4027 overlap by 20 nucleotides
Ga0059261_4024: Ga0059261_4024 - Predicted phosphotransferase related to Ser/Thr protein kinases, at 4,142,173 to 4,143,165
_4024
Ga0059261_4025: Ga0059261_4025 - Nucleotidyl transferase, at 4,143,162 to 4,143,923
_4025
Ga0059261_4026: Ga0059261_4026 - double-strand break repair protein AddB, alphaproteobacterial type, at 4,143,916 to 4,146,861
_4026
Ga0059261_4027: Ga0059261_4027 - DNA helicase/exodeoxyribonuclease V, subunit A (EC 3.1.11.5), at 4,146,842 to 4,150,240
_4027
Position (kb)
4143
4144
4145
4146
4147 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4142.947 kb on + strand, within Ga0059261_4024 at 4142.947 kb on + strand, within Ga0059261_4024 at 4143.058 kb on + strand, within Ga0059261_4024 at 4143.059 kb on - strand, within Ga0059261_4024 at 4143.120 kb on + strand at 4143.120 kb on + strand at 4143.378 kb on + strand, within Ga0059261_4025 at 4143.378 kb on + strand, within Ga0059261_4025 at 4143.378 kb on + strand, within Ga0059261_4025 at 4143.837 kb on + strand, within Ga0059261_4025 at 4143.943 kb on + strand at 4143.943 kb on + strand at 4143.943 kb on + strand at 4143.943 kb on + strand at 4143.943 kb on + strand at 4143.943 kb on + strand at 4143.943 kb on + strand at 4146.841 kb on + strand at 4146.841 kb on + strand at 4146.841 kb on + strand at 4146.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 4,142,947 + Ga0059261_4024 0.78 -0.5 4,142,947 + Ga0059261_4024 0.78 +0.4 4,143,058 + Ga0059261_4024 0.89 +0.1 4,143,059 - Ga0059261_4024 0.89 +0.4 4,143,120 + -0.2 4,143,120 + -0.2 4,143,378 + Ga0059261_4025 0.28 -1.2 4,143,378 + Ga0059261_4025 0.28 +0.1 4,143,378 + Ga0059261_4025 0.28 +0.6 4,143,837 + Ga0059261_4025 0.89 -0.4 4,143,943 + +0.5 4,143,943 + -0.4 4,143,943 + -0.7 4,143,943 + -0.1 4,143,943 + -0.5 4,143,943 + +0.3 4,143,943 + -2.9 4,146,841 + -0.1 4,146,841 + -0.1 4,146,841 + -0.3 4,146,842 - -1.2
Or see this region's nucleotide sequence