Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3167 and Ga0059261_3168 are separated by 110 nucleotides Ga0059261_3168 and Ga0059261_3169 are separated by 163 nucleotides Ga0059261_3169 and Ga0059261_3170 are separated by 70 nucleotides Ga0059261_3170 and Ga0059261_3171 overlap by 4 nucleotides
Ga0059261_3167: Ga0059261_3167 - Histidine kinase/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, at 3,303,257 to 3,304,354
_3167
Ga0059261_3168: Ga0059261_3168 - peroxiredoxin, OsmC subfamily, at 3,304,465 to 3,304,890
_3168
Ga0059261_3169: Ga0059261_3169 - phosphoglycerate mutase, BPG-dependent, family 1, at 3,305,054 to 3,305,740
_3169
Ga0059261_3170: Ga0059261_3170 - Dienelactone hydrolase and related enzymes, at 3,305,811 to 3,306,536
_3170
Ga0059261_3171: Ga0059261_3171 - Domain of unknown function (DUF4126), at 3,306,533 to 3,307,123
_3171
Position (kb) 3305
3306 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 3304.371 kb on + strand at 3304.407 kb on + strand at 3304.407 kb on + strand at 3304.407 kb on + strand at 3304.407 kb on + strand at 3304.407 kb on + strand at 3304.407 kb on + strand at 3304.407 kb on + strand at 3304.408 kb on - strand at 3304.408 kb on - strand at 3304.408 kb on - strand at 3304.408 kb on - strand at 3304.408 kb on - strand at 3304.423 kb on + strand at 3304.492 kb on + strand at 3304.492 kb on + strand at 3304.492 kb on + strand at 3304.492 kb on + strand at 3304.493 kb on - strand at 3304.561 kb on + strand, within Ga0059261_3168 at 3304.561 kb on + strand, within Ga0059261_3168 at 3304.561 kb on + strand, within Ga0059261_3168 at 3304.561 kb on + strand, within Ga0059261_3168 at 3304.562 kb on - strand, within Ga0059261_3168 at 3304.562 kb on - strand, within Ga0059261_3168 at 3304.689 kb on + strand, within Ga0059261_3168 at 3304.689 kb on + strand, within Ga0059261_3168 at 3304.689 kb on + strand, within Ga0059261_3168 at 3304.690 kb on - strand, within Ga0059261_3168 at 3304.690 kb on - strand, within Ga0059261_3168 at 3304.690 kb on - strand, within Ga0059261_3168 at 3304.908 kb on + strand at 3304.908 kb on + strand at 3304.908 kb on + strand at 3304.909 kb on - strand at 3304.909 kb on - strand at 3304.909 kb on - strand at 3304.958 kb on + strand at 3304.958 kb on + strand at 3304.959 kb on - strand at 3304.959 kb on - strand at 3305.070 kb on + strand at 3305.070 kb on + strand at 3305.070 kb on + strand at 3305.071 kb on - strand at 3305.071 kb on - strand at 3305.071 kb on - strand at 3305.071 kb on - strand at 3305.071 kb on - strand at 3305.073 kb on + strand at 3305.073 kb on + strand at 3305.074 kb on - strand at 3305.074 kb on - strand at 3305.074 kb on - strand at 3305.109 kb on + strand at 3305.109 kb on + strand at 3305.110 kb on - strand at 3305.110 kb on - strand at 3305.110 kb on - strand at 3305.110 kb on - strand at 3305.110 kb on - strand at 3305.265 kb on + strand, within Ga0059261_3169 at 3305.266 kb on - strand, within Ga0059261_3169 at 3305.266 kb on - strand, within Ga0059261_3169 at 3305.266 kb on - strand, within Ga0059261_3169 at 3305.328 kb on + strand, within Ga0059261_3169 at 3305.328 kb on + strand, within Ga0059261_3169 at 3305.328 kb on + strand, within Ga0059261_3169 at 3305.328 kb on + strand, within Ga0059261_3169 at 3305.329 kb on - strand, within Ga0059261_3169 at 3305.329 kb on - strand, within Ga0059261_3169 at 3305.329 kb on - strand, within Ga0059261_3169 at 3305.395 kb on + strand, within Ga0059261_3169 at 3305.395 kb on + strand, within Ga0059261_3169 at 3305.396 kb on - strand, within Ga0059261_3169 at 3305.396 kb on - strand, within Ga0059261_3169 at 3305.472 kb on + strand, within Ga0059261_3169 at 3305.473 kb on - strand, within Ga0059261_3169 at 3305.473 kb on - strand, within Ga0059261_3169 at 3305.473 kb on - strand, within Ga0059261_3169 at 3305.838 kb on + strand at 3305.838 kb on + strand at 3305.838 kb on + strand at 3305.838 kb on + strand at 3305.838 kb on + strand at 3305.838 kb on + strand at 3305.838 kb on + strand at 3305.838 kb on + strand at 3305.838 kb on + strand at 3305.838 kb on + strand at 3305.839 kb on - strand at 3305.839 kb on - strand at 3305.839 kb on - strand at 3305.839 kb on - strand at 3306.009 kb on + strand, within Ga0059261_3170 at 3306.009 kb on + strand, within Ga0059261_3170 at 3306.009 kb on + strand, within Ga0059261_3170 at 3306.009 kb on + strand, within Ga0059261_3170 at 3306.009 kb on + strand, within Ga0059261_3170 at 3306.009 kb on + strand at 3306.009 kb on + strand, within Ga0059261_3170 at 3306.009 kb on + strand, within Ga0059261_3170 at 3306.010 kb on - strand, within Ga0059261_3170 at 3306.010 kb on - strand, within Ga0059261_3170 at 3306.010 kb on - strand, within Ga0059261_3170 at 3306.010 kb on - strand, within Ga0059261_3170 at 3306.010 kb on - strand, within Ga0059261_3170 at 3306.057 kb on + strand, within Ga0059261_3170 at 3306.057 kb on + strand, within Ga0059261_3170 at 3306.057 kb on + strand, within Ga0059261_3170 at 3306.057 kb on + strand, within Ga0059261_3170 at 3306.057 kb on + strand, within Ga0059261_3170 at 3306.057 kb on + strand, within Ga0059261_3170 at 3306.057 kb on + strand, within Ga0059261_3170 at 3306.057 kb on + strand, within Ga0059261_3170 at 3306.057 kb on + strand, within Ga0059261_3170 at 3306.057 kb on + strand, within Ga0059261_3170 at 3306.057 kb on + strand, within Ga0059261_3170 at 3306.057 kb on + strand, within Ga0059261_3170 at 3306.057 kb on - strand, within Ga0059261_3170 at 3306.058 kb on - strand, within Ga0059261_3170 at 3306.058 kb on - strand, within Ga0059261_3170 at 3306.058 kb on - strand, within Ga0059261_3170 at 3306.058 kb on - strand, within Ga0059261_3170 at 3306.058 kb on - strand, within Ga0059261_3170 at 3306.058 kb on - strand, within Ga0059261_3170 at 3306.058 kb on - strand, within Ga0059261_3170 at 3306.058 kb on - strand, within Ga0059261_3170 at 3306.058 kb on - strand, within Ga0059261_3170 at 3306.058 kb on - strand, within Ga0059261_3170 at 3306.059 kb on + strand, within Ga0059261_3170 at 3306.059 kb on + strand, within Ga0059261_3170 at 3306.059 kb on + strand, within Ga0059261_3170 at 3306.059 kb on + strand, within Ga0059261_3170 at 3306.059 kb on + strand, within Ga0059261_3170 at 3306.059 kb on + strand, within Ga0059261_3170 at 3306.059 kb on + strand, within Ga0059261_3170 at 3306.059 kb on + strand, within Ga0059261_3170 at 3306.059 kb on + strand, within Ga0059261_3170 at 3306.060 kb on - strand, within Ga0059261_3170 at 3306.060 kb on - strand, within Ga0059261_3170 at 3306.060 kb on - strand, within Ga0059261_3170 at 3306.060 kb on - strand, within Ga0059261_3170 at 3306.060 kb on - strand, within Ga0059261_3170 at 3306.060 kb on - strand, within Ga0059261_3170 at 3306.060 kb on - strand, within Ga0059261_3170 at 3306.060 kb on - strand, within Ga0059261_3170 at 3306.171 kb on + strand, within Ga0059261_3170 at 3306.172 kb on - strand, within Ga0059261_3170 at 3306.172 kb on - strand, within Ga0059261_3170 at 3306.202 kb on + strand, within Ga0059261_3170 at 3306.267 kb on + strand, within Ga0059261_3170 at 3306.267 kb on + strand, within Ga0059261_3170 at 3306.267 kb on + strand at 3306.267 kb on + strand, within Ga0059261_3170 at 3306.267 kb on + strand, within Ga0059261_3170 at 3306.268 kb on - strand, within Ga0059261_3170 at 3306.268 kb on - strand, within Ga0059261_3170 at 3306.268 kb on - strand, within Ga0059261_3170 at 3306.268 kb on - strand, within Ga0059261_3170 at 3306.273 kb on + strand, within Ga0059261_3170 at 3306.274 kb on - strand, within Ga0059261_3170 at 3306.274 kb on - strand, within Ga0059261_3170 at 3306.402 kb on + strand, within Ga0059261_3170 at 3306.469 kb on - strand at 3306.473 kb on + strand at 3306.473 kb on + strand at 3306.473 kb on + strand at 3306.473 kb on + strand at 3306.473 kb on + strand at 3306.474 kb on - strand at 3306.474 kb on - strand at 3306.474 kb on - strand at 3306.474 kb on - strand at 3306.474 kb on - strand at 3306.474 kb on - strand at 3306.474 kb on - strand at 3306.491 kb on + strand at 3306.491 kb on + strand at 3306.491 kb on + strand at 3306.491 kb on + strand at 3306.492 kb on - strand at 3306.492 kb on - strand at 3306.492 kb on - strand at 3306.492 kb on - strand at 3306.492 kb on - strand at 3306.554 kb on + strand at 3306.554 kb on + strand at 3306.555 kb on - strand at 3306.555 kb on - strand at 3306.563 kb on + strand at 3306.563 kb on + strand at 3306.564 kb on - strand at 3306.564 kb on - strand at 3306.727 kb on + strand, within Ga0059261_3171 at 3306.727 kb on + strand, within Ga0059261_3171 at 3306.727 kb on + strand, within Ga0059261_3171 at 3306.728 kb on - strand, within Ga0059261_3171 at 3306.728 kb on - strand, within Ga0059261_3171 at 3306.728 kb on - strand at 3306.728 kb on - strand, within Ga0059261_3171
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 3,304,371 + +0.4 3,304,407 + +1.2 3,304,407 + -0.2 3,304,407 + +0.0 3,304,407 + -0.0 3,304,407 + -0.2 3,304,407 + +0.4 3,304,407 + +0.2 3,304,408 - -3.1 3,304,408 - -0.6 3,304,408 - -1.4 3,304,408 - -2.1 3,304,408 - -3.2 3,304,423 + +0.5 3,304,492 + -0.3 3,304,492 + +0.7 3,304,492 + +0.1 3,304,492 + +0.3 3,304,493 - -1.6 3,304,561 + Ga0059261_3168 0.23 +0.7 3,304,561 + Ga0059261_3168 0.23 +0.9 3,304,561 + Ga0059261_3168 0.23 -0.1 3,304,561 + Ga0059261_3168 0.23 -0.8 3,304,562 - Ga0059261_3168 0.23 -0.4 3,304,562 - Ga0059261_3168 0.23 -0.3 3,304,689 + Ga0059261_3168 0.53 +0.3 3,304,689 + Ga0059261_3168 0.53 +0.3 3,304,689 + Ga0059261_3168 0.53 +0.3 3,304,690 - Ga0059261_3168 0.53 -0.2 3,304,690 - Ga0059261_3168 0.53 +0.9 3,304,690 - Ga0059261_3168 0.53 +1.3 3,304,908 + +0.5 3,304,908 + +0.1 3,304,908 + +0.3 3,304,909 - +0.1 3,304,909 - +0.4 3,304,909 - -0.3 3,304,958 + -0.3 3,304,958 + +0.2 3,304,959 - +0.1 3,304,959 - -0.4 3,305,070 + +0.5 3,305,070 + -0.0 3,305,070 + -0.1 3,305,071 - +0.7 3,305,071 - +0.5 3,305,071 - +0.5 3,305,071 - +0.4 3,305,071 - -0.2 3,305,073 + -0.6 3,305,073 + -0.8 3,305,074 - +0.4 3,305,074 - -0.0 3,305,074 - +0.1 3,305,109 + -3.5 3,305,109 + -3.9 3,305,110 - -5.8 3,305,110 - -4.0 3,305,110 - -5.8 3,305,110 - -5.5 3,305,110 - -2.8 3,305,265 + Ga0059261_3169 0.31 -1.5 3,305,266 - Ga0059261_3169 0.31 -4.3 3,305,266 - Ga0059261_3169 0.31 -3.9 3,305,266 - Ga0059261_3169 0.31 -4.4 3,305,328 + Ga0059261_3169 0.40 -3.6 3,305,328 + Ga0059261_3169 0.40 -3.1 3,305,328 + Ga0059261_3169 0.40 -5.8 3,305,328 + Ga0059261_3169 0.40 -4.5 3,305,329 - Ga0059261_3169 0.40 -4.3 3,305,329 - Ga0059261_3169 0.40 -4.0 3,305,329 - Ga0059261_3169 0.40 -3.5 3,305,395 + Ga0059261_3169 0.50 -4.5 3,305,395 + Ga0059261_3169 0.50 -4.0 3,305,396 - Ga0059261_3169 0.50 -3.8 3,305,396 - Ga0059261_3169 0.50 -5.3 3,305,472 + Ga0059261_3169 0.61 -4.5 3,305,473 - Ga0059261_3169 0.61 -5.6 3,305,473 - Ga0059261_3169 0.61 -2.5 3,305,473 - Ga0059261_3169 0.61 -2.9 3,305,838 + +0.4 3,305,838 + +0.3 3,305,838 + -0.2 3,305,838 + +0.0 3,305,838 + +0.3 3,305,838 + +0.7 3,305,838 + -0.0 3,305,838 + +0.6 3,305,838 + +0.7 3,305,838 + +1.3 3,305,839 - -0.2 3,305,839 - +0.1 3,305,839 - +0.1 3,305,839 - -0.1 3,306,009 + Ga0059261_3170 0.27 +0.8 3,306,009 + Ga0059261_3170 0.27 +0.1 3,306,009 + Ga0059261_3170 0.27 +0.3 3,306,009 + Ga0059261_3170 0.27 +0.7 3,306,009 + Ga0059261_3170 0.27 +1.2 3,306,009 + +0.7 3,306,009 + Ga0059261_3170 0.27 -1.0 3,306,009 + Ga0059261_3170 0.27 -1.2 3,306,010 - Ga0059261_3170 0.27 -0.2 3,306,010 - Ga0059261_3170 0.27 +0.1 3,306,010 - Ga0059261_3170 0.27 -0.8 3,306,010 - Ga0059261_3170 0.27 +0.5 3,306,010 - Ga0059261_3170 0.27 +0.9 3,306,057 + Ga0059261_3170 0.34 +0.2 3,306,057 + Ga0059261_3170 0.34 -0.1 3,306,057 + Ga0059261_3170 0.34 +1.1 3,306,057 + Ga0059261_3170 0.34 +0.9 3,306,057 + Ga0059261_3170 0.34 +0.5 3,306,057 + Ga0059261_3170 0.34 +0.8 3,306,057 + Ga0059261_3170 0.34 +0.8 3,306,057 + Ga0059261_3170 0.34 +0.1 3,306,057 + Ga0059261_3170 0.34 +0.3 3,306,057 + Ga0059261_3170 0.34 +0.4 3,306,057 + Ga0059261_3170 0.34 +0.6 3,306,057 + Ga0059261_3170 0.34 +0.6 3,306,057 - Ga0059261_3170 0.34 +0.5 3,306,058 - Ga0059261_3170 0.34 +0.4 3,306,058 - Ga0059261_3170 0.34 +0.3 3,306,058 - Ga0059261_3170 0.34 +0.3 3,306,058 - Ga0059261_3170 0.34 -0.6 3,306,058 - Ga0059261_3170 0.34 +0.3 3,306,058 - Ga0059261_3170 0.34 +0.6 3,306,058 - Ga0059261_3170 0.34 +1.3 3,306,058 - Ga0059261_3170 0.34 -0.5 3,306,058 - Ga0059261_3170 0.34 +0.8 3,306,058 - Ga0059261_3170 0.34 +0.0 3,306,059 + Ga0059261_3170 0.34 +0.1 3,306,059 + Ga0059261_3170 0.34 +0.1 3,306,059 + Ga0059261_3170 0.34 -0.1 3,306,059 + Ga0059261_3170 0.34 +0.3 3,306,059 + Ga0059261_3170 0.34 -0.0 3,306,059 + Ga0059261_3170 0.34 +0.2 3,306,059 + Ga0059261_3170 0.34 +0.4 3,306,059 + Ga0059261_3170 0.34 -0.3 3,306,059 + Ga0059261_3170 0.34 -0.2 3,306,060 - Ga0059261_3170 0.34 +0.4 3,306,060 - Ga0059261_3170 0.34 +0.5 3,306,060 - Ga0059261_3170 0.34 -0.3 3,306,060 - Ga0059261_3170 0.34 +0.6 3,306,060 - Ga0059261_3170 0.34 -0.1 3,306,060 - Ga0059261_3170 0.34 +0.1 3,306,060 - Ga0059261_3170 0.34 -0.6 3,306,060 - Ga0059261_3170 0.34 +0.1 3,306,171 + Ga0059261_3170 0.50 +0.2 3,306,172 - Ga0059261_3170 0.50 +0.8 3,306,172 - Ga0059261_3170 0.50 +0.1 3,306,202 + Ga0059261_3170 0.54 +0.4 3,306,267 + Ga0059261_3170 0.63 +0.7 3,306,267 + Ga0059261_3170 0.63 +0.2 3,306,267 + -0.3 3,306,267 + Ga0059261_3170 0.63 +0.4 3,306,267 + Ga0059261_3170 0.63 -1.6 3,306,268 - Ga0059261_3170 0.63 +0.7 3,306,268 - Ga0059261_3170 0.63 -0.0 3,306,268 - Ga0059261_3170 0.63 +0.8 3,306,268 - Ga0059261_3170 0.63 +0.2 3,306,273 + Ga0059261_3170 0.64 +0.5 3,306,274 - Ga0059261_3170 0.64 -0.4 3,306,274 - Ga0059261_3170 0.64 +0.1 3,306,402 + Ga0059261_3170 0.81 +0.5 3,306,469 - -0.2 3,306,473 + -0.3 3,306,473 + +0.2 3,306,473 + -0.1 3,306,473 + +0.6 3,306,473 + +0.2 3,306,474 - +0.3 3,306,474 - -0.4 3,306,474 - -0.4 3,306,474 - +0.2 3,306,474 - +0.4 3,306,474 - -0.1 3,306,474 - -0.1 3,306,491 + +0.4 3,306,491 + -2.3 3,306,491 + +0.1 3,306,491 + -0.9 3,306,492 - +0.1 3,306,492 - -0.1 3,306,492 - +0.5 3,306,492 - +0.1 3,306,492 - +0.5 3,306,554 + +0.8 3,306,554 + -0.3 3,306,555 - +0.4 3,306,555 - +0.4 3,306,563 + +0.5 3,306,563 + -0.1 3,306,564 - -0.5 3,306,564 - -0.2 3,306,727 + Ga0059261_3171 0.33 +0.9 3,306,727 + Ga0059261_3171 0.33 +0.4 3,306,727 + Ga0059261_3171 0.33 +0.4 3,306,728 - Ga0059261_3171 0.33 +0.2 3,306,728 - Ga0059261_3171 0.33 -0.0 3,306,728 - +0.9 3,306,728 - Ga0059261_3171 0.33 +0.5
Or see this region's nucleotide sequence