Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1136

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1135 and Ga0059261_1136 are separated by 242 nucleotidesGa0059261_1136 and Ga0059261_1137 overlap by 4 nucleotidesGa0059261_1137 and Ga0059261_1138 are separated by 105 nucleotidesGa0059261_1138 and Ga0059261_1139 are separated by 62 nucleotides Ga0059261_1135: Ga0059261_1135 - Flagellin and related hook-associated proteins, at 1,161,604 to 1,162,512 _1135 Ga0059261_1136: Ga0059261_1136 - hypothetical protein, at 1,162,755 to 1,164,515 _1136 Ga0059261_1137: Ga0059261_1137 - hypothetical protein, at 1,164,512 to 1,164,766 _1137 Ga0059261_1138: Ga0059261_1138 - hypothetical protein, at 1,164,872 to 1,165,267 _1138 Ga0059261_1139: Ga0059261_1139 - MgtE intracellular N domain, at 1,165,330 to 1,165,974 _1139 Position (kb) 1162 1163 1164 1165Strain fitness (log2 ratio) -1 0 1 2at 1161.790 kb on + strand, within Ga0059261_1135at 1161.790 kb on + strand, within Ga0059261_1135at 1161.790 kb on + strand, within Ga0059261_1135at 1161.790 kb on + strand, within Ga0059261_1135at 1161.832 kb on + strand, within Ga0059261_1135at 1161.832 kb on + strand, within Ga0059261_1135at 1161.832 kb on + strand, within Ga0059261_1135at 1161.832 kb on + strand, within Ga0059261_1135at 1161.832 kb on + strand, within Ga0059261_1135at 1161.846 kb on + strand, within Ga0059261_1135at 1161.847 kb on - strand, within Ga0059261_1135at 1162.136 kb on - strand, within Ga0059261_1135at 1162.136 kb on - strand, within Ga0059261_1135at 1162.136 kb on - strand, within Ga0059261_1135at 1162.425 kb on + strandat 1162.425 kb on + strandat 1162.426 kb on - strandat 1162.426 kb on - strandat 1162.426 kb on - strandat 1162.459 kb on + strandat 1162.459 kb on + strandat 1162.459 kb on + strandat 1162.460 kb on - strandat 1162.661 kb on + strandat 1162.661 kb on + strandat 1162.661 kb on + strandat 1162.662 kb on - strandat 1162.662 kb on - strandat 1162.662 kb on - strandat 1162.662 kb on - strandat 1162.662 kb on - strandat 1162.717 kb on + strandat 1162.717 kb on + strandat 1162.717 kb on + strandat 1162.718 kb on - strandat 1162.757 kb on - strandat 1163.155 kb on - strand, within Ga0059261_1136at 1163.222 kb on - strand, within Ga0059261_1136at 1163.282 kb on + strand, within Ga0059261_1136at 1163.282 kb on + strand, within Ga0059261_1136at 1163.282 kb on + strand, within Ga0059261_1136at 1163.283 kb on - strand, within Ga0059261_1136at 1163.283 kb on - strand, within Ga0059261_1136at 1163.350 kb on + strand, within Ga0059261_1136at 1163.350 kb on + strand, within Ga0059261_1136at 1163.350 kb on + strand, within Ga0059261_1136at 1163.350 kb on + strand, within Ga0059261_1136at 1163.377 kb on + strand, within Ga0059261_1136at 1163.377 kb on + strand, within Ga0059261_1136at 1163.378 kb on - strand, within Ga0059261_1136at 1163.378 kb on - strand, within Ga0059261_1136at 1163.458 kb on + strand, within Ga0059261_1136at 1163.458 kb on + strand, within Ga0059261_1136at 1163.459 kb on - strand, within Ga0059261_1136at 1163.459 kb on - strand, within Ga0059261_1136at 1163.468 kb on - strand, within Ga0059261_1136at 1163.616 kb on + strand, within Ga0059261_1136at 1163.616 kb on + strand, within Ga0059261_1136at 1163.616 kb on + strand, within Ga0059261_1136at 1163.616 kb on + strand, within Ga0059261_1136at 1163.616 kb on + strand, within Ga0059261_1136at 1163.616 kb on + strand, within Ga0059261_1136at 1163.617 kb on - strand, within Ga0059261_1136at 1163.617 kb on - strand, within Ga0059261_1136at 1163.617 kb on - strand, within Ga0059261_1136at 1163.617 kb on - strand, within Ga0059261_1136at 1163.617 kb on - strand, within Ga0059261_1136at 1163.617 kb on - strand, within Ga0059261_1136at 1163.617 kb on - strand, within Ga0059261_1136at 1163.617 kb on - strand, within Ga0059261_1136at 1163.617 kb on - strand, within Ga0059261_1136at 1163.617 kb on - strand, within Ga0059261_1136at 1163.644 kb on + strand, within Ga0059261_1136at 1163.644 kb on + strand, within Ga0059261_1136at 1163.645 kb on - strand, within Ga0059261_1136at 1163.645 kb on - strand, within Ga0059261_1136at 1163.692 kb on + strand, within Ga0059261_1136at 1163.692 kb on + strand, within Ga0059261_1136at 1163.876 kb on - strand, within Ga0059261_1136at 1163.876 kb on - strand, within Ga0059261_1136at 1164.080 kb on + strand, within Ga0059261_1136at 1164.080 kb on + strand, within Ga0059261_1136at 1164.080 kb on + strandat 1164.080 kb on + strand, within Ga0059261_1136at 1164.080 kb on + strand, within Ga0059261_1136at 1164.080 kb on + strand, within Ga0059261_1136at 1164.080 kb on + strand, within Ga0059261_1136at 1164.080 kb on + strand, within Ga0059261_1136at 1164.080 kb on + strand, within Ga0059261_1136at 1164.080 kb on + strand, within Ga0059261_1136at 1164.080 kb on + strand, within Ga0059261_1136at 1164.081 kb on - strand, within Ga0059261_1136at 1164.081 kb on - strand, within Ga0059261_1136at 1164.081 kb on - strandat 1164.081 kb on - strand, within Ga0059261_1136at 1164.181 kb on + strand, within Ga0059261_1136at 1164.182 kb on - strand, within Ga0059261_1136at 1164.280 kb on + strand, within Ga0059261_1136at 1164.280 kb on + strand, within Ga0059261_1136at 1164.280 kb on + strand, within Ga0059261_1136at 1164.281 kb on - strand, within Ga0059261_1136at 1164.281 kb on - strand, within Ga0059261_1136at 1164.281 kb on - strand, within Ga0059261_1136at 1164.718 kb on + strand, within Ga0059261_1137at 1164.718 kb on + strand, within Ga0059261_1137at 1164.742 kb on + strandat 1164.743 kb on - strandat 1164.794 kb on + strandat 1164.794 kb on + strandat 1164.794 kb on + strandat 1164.795 kb on - strandat 1164.795 kb on - strandat 1164.795 kb on - strandat 1164.795 kb on - strandat 1164.795 kb on - strandat 1164.797 kb on + strandat 1164.797 kb on + strandat 1164.797 kb on + strandat 1164.798 kb on - strandat 1164.798 kb on - strandat 1164.798 kb on - strandat 1164.798 kb on - strandat 1164.798 kb on - strandat 1164.799 kb on + strandat 1164.799 kb on + strandat 1164.799 kb on + strandat 1164.799 kb on + strandat 1164.799 kb on + strandat 1164.799 kb on + strandat 1164.799 kb on + strandat 1164.799 kb on + strandat 1164.799 kb on + strandat 1164.799 kb on + strandat 1164.800 kb on - strandat 1164.800 kb on - strandat 1164.800 kb on - strandat 1164.800 kb on - strandat 1164.800 kb on - strandat 1164.800 kb on - strandat 1164.800 kb on - strandat 1164.939 kb on - strand, within Ga0059261_1138at 1164.939 kb on - strand, within Ga0059261_1138at 1164.939 kb on - strand, within Ga0059261_1138at 1165.026 kb on + strand, within Ga0059261_1138at 1165.026 kb on + strand, within Ga0059261_1138at 1165.026 kb on + strandat 1165.026 kb on + strand, within Ga0059261_1138at 1165.027 kb on - strand, within Ga0059261_1138at 1165.027 kb on - strand, within Ga0059261_1138at 1165.331 kb on + strandat 1165.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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1,161,790 + Ga0059261_1135 0.20 -0.1
1,161,790 + Ga0059261_1135 0.20 -0.0
1,161,790 + Ga0059261_1135 0.20 -0.1
1,161,790 + Ga0059261_1135 0.20 +0.0
1,161,832 + Ga0059261_1135 0.25 +0.1
1,161,832 + Ga0059261_1135 0.25 -0.3
1,161,832 + Ga0059261_1135 0.25 -0.0
1,161,832 + Ga0059261_1135 0.25 +0.6
1,161,832 + Ga0059261_1135 0.25 +0.1
1,161,846 + Ga0059261_1135 0.27 +0.1
1,161,847 - Ga0059261_1135 0.27 -0.0
1,162,136 - Ga0059261_1135 0.59 +0.5
1,162,136 - Ga0059261_1135 0.59 +0.1
1,162,136 - Ga0059261_1135 0.59 -0.4
1,162,425 + +0.1
1,162,425 + +0.3
1,162,426 - -0.0
1,162,426 - +0.2
1,162,426 - +0.2
1,162,459 + +0.1
1,162,459 + -0.0
1,162,459 + +0.4
1,162,460 - +0.2
1,162,661 + -0.1
1,162,661 + +0.4
1,162,661 + +0.1
1,162,662 - -0.3
1,162,662 - +0.2
1,162,662 - -0.4
1,162,662 - +0.9
1,162,662 - -0.5
1,162,717 + +0.9
1,162,717 + +0.8
1,162,717 + +0.2
1,162,718 - -0.0
1,162,757 - +0.1
1,163,155 - Ga0059261_1136 0.23 -0.8
1,163,222 - Ga0059261_1136 0.27 +0.3
1,163,282 + Ga0059261_1136 0.30 +0.7
1,163,282 + Ga0059261_1136 0.30 -0.6
1,163,282 + Ga0059261_1136 0.30 -1.5
1,163,283 - Ga0059261_1136 0.30 -0.4
1,163,283 - Ga0059261_1136 0.30 +0.3
1,163,350 + Ga0059261_1136 0.34 -0.2
1,163,350 + Ga0059261_1136 0.34 -0.0
1,163,350 + Ga0059261_1136 0.34 -0.0
1,163,350 + Ga0059261_1136 0.34 +0.4
1,163,377 + Ga0059261_1136 0.35 +0.6
1,163,377 + Ga0059261_1136 0.35 -0.3
1,163,378 - Ga0059261_1136 0.35 -0.3
1,163,378 - Ga0059261_1136 0.35 -0.6
1,163,458 + Ga0059261_1136 0.40 -0.2
1,163,458 + Ga0059261_1136 0.40 +1.2
1,163,459 - Ga0059261_1136 0.40 +0.4
1,163,459 - Ga0059261_1136 0.40 +2.0
1,163,468 - Ga0059261_1136 0.40 +0.2
1,163,616 + Ga0059261_1136 0.49 -0.0
1,163,616 + Ga0059261_1136 0.49 -0.1
1,163,616 + Ga0059261_1136 0.49 -0.2
1,163,616 + Ga0059261_1136 0.49 -0.1
1,163,616 + Ga0059261_1136 0.49 -0.6
1,163,616 + Ga0059261_1136 0.49 -0.4
1,163,617 - Ga0059261_1136 0.49 +0.4
1,163,617 - Ga0059261_1136 0.49 +0.6
1,163,617 - Ga0059261_1136 0.49 +0.7
1,163,617 - Ga0059261_1136 0.49 +0.6
1,163,617 - Ga0059261_1136 0.49 -0.9
1,163,617 - Ga0059261_1136 0.49 +0.2
1,163,617 - Ga0059261_1136 0.49 +0.4
1,163,617 - Ga0059261_1136 0.49 +0.4
1,163,617 - Ga0059261_1136 0.49 +0.3
1,163,617 - Ga0059261_1136 0.49 +0.4
1,163,644 + Ga0059261_1136 0.50 +0.6
1,163,644 + Ga0059261_1136 0.50 +0.4
1,163,645 - Ga0059261_1136 0.51 +0.1
1,163,645 - Ga0059261_1136 0.51 +0.1
1,163,692 + Ga0059261_1136 0.53 +0.1
1,163,692 + Ga0059261_1136 0.53 +0.8
1,163,876 - Ga0059261_1136 0.64 +0.4
1,163,876 - Ga0059261_1136 0.64 +0.7
1,164,080 + Ga0059261_1136 0.75 +1.0
1,164,080 + Ga0059261_1136 0.75 +0.1
1,164,080 + +0.5
1,164,080 + Ga0059261_1136 0.75 +0.5
1,164,080 + Ga0059261_1136 0.75 +0.1
1,164,080 + Ga0059261_1136 0.75 +0.3
1,164,080 + Ga0059261_1136 0.75 +0.2
1,164,080 + Ga0059261_1136 0.75 +1.5
1,164,080 + Ga0059261_1136 0.75 +0.1
1,164,080 + Ga0059261_1136 0.75 -0.0
1,164,080 + Ga0059261_1136 0.75 -0.2
1,164,081 - Ga0059261_1136 0.75 +0.3
1,164,081 - Ga0059261_1136 0.75 -0.1
1,164,081 - +0.1
1,164,081 - Ga0059261_1136 0.75 +0.4
1,164,181 + Ga0059261_1136 0.81 -0.1
1,164,182 - Ga0059261_1136 0.81 +0.1
1,164,280 + Ga0059261_1136 0.87 +0.2
1,164,280 + Ga0059261_1136 0.87 +0.4
1,164,280 + Ga0059261_1136 0.87 +0.0
1,164,281 - Ga0059261_1136 0.87 +1.6
1,164,281 - Ga0059261_1136 0.87 +0.3
1,164,281 - Ga0059261_1136 0.87 -0.1
1,164,718 + Ga0059261_1137 0.81 -0.5
1,164,718 + Ga0059261_1137 0.81 -0.2
1,164,742 + +0.5
1,164,743 - +1.0
1,164,794 + +0.8
1,164,794 + -0.1
1,164,794 + +0.2
1,164,795 - -0.7
1,164,795 - -0.2
1,164,795 - +0.7
1,164,795 - +0.4
1,164,795 - +0.4
1,164,797 + +0.9
1,164,797 + +0.7
1,164,797 + +0.1
1,164,798 - -0.3
1,164,798 - +0.1
1,164,798 - -0.5
1,164,798 - -0.3
1,164,798 - +0.3
1,164,799 + -0.3
1,164,799 + -0.3
1,164,799 + +0.1
1,164,799 + +0.9
1,164,799 + -0.6
1,164,799 + +0.1
1,164,799 + +0.7
1,164,799 + +0.8
1,164,799 + -0.1
1,164,799 + +0.3
1,164,800 - +0.0
1,164,800 - +0.4
1,164,800 - +0.9
1,164,800 - -0.5
1,164,800 - -0.5
1,164,800 - -0.3
1,164,800 - -0.6
1,164,939 - Ga0059261_1138 0.17 -0.4
1,164,939 - Ga0059261_1138 0.17 -0.5
1,164,939 - Ga0059261_1138 0.17 -0.5
1,165,026 + Ga0059261_1138 0.39 -0.5
1,165,026 + Ga0059261_1138 0.39 -0.1
1,165,026 + -1.7
1,165,026 + Ga0059261_1138 0.39 -0.0
1,165,027 - Ga0059261_1138 0.39 -0.0
1,165,027 - Ga0059261_1138 0.39 -0.5
1,165,331 + +0.6
1,165,332 - +0.4

Or see this region's nucleotide sequence