Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0068

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0066 and Ga0059261_0067 are separated by 113 nucleotidesGa0059261_0067 and Ga0059261_0068 are separated by 100 nucleotidesGa0059261_0068 and Ga0059261_0069 are separated by 90 nucleotides Ga0059261_0066: Ga0059261_0066 - ketol-acid reductoisomerase (EC 1.1.1.86), at 57,522 to 58,541 _0066 Ga0059261_0067: Ga0059261_0067 - acetolactate synthase, small subunit (EC 2.2.1.6), at 58,655 to 59,170 _0067 Ga0059261_0068: Ga0059261_0068 - acetolactate synthase, large subunit (EC 2.2.1.6), at 59,271 to 61,016 _0068 Ga0059261_0069: Ga0059261_0069 - tRNA dimethylallyltransferase, at 61,107 to 62,030 _0069 Position (kb) 59 60 61 62Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 58.560 kb on - strandat 58.560 kb on - strandat 58.562 kb on + strandat 58.562 kb on + strandat 58.563 kb on - strandat 58.563 kb on - strandat 58.818 kb on + strand, within Ga0059261_0067at 58.818 kb on + strand, within Ga0059261_0067at 58.819 kb on - strand, within Ga0059261_0067at 58.819 kb on - strand, within Ga0059261_0067at 59.032 kb on + strand, within Ga0059261_0067at 59.059 kb on + strand, within Ga0059261_0067at 59.060 kb on - strand, within Ga0059261_0067at 59.060 kb on - strand, within Ga0059261_0067at 59.060 kb on - strand, within Ga0059261_0067at 59.062 kb on + strand, within Ga0059261_0067at 59.062 kb on + strand, within Ga0059261_0067at 59.062 kb on + strand, within Ga0059261_0067at 59.063 kb on - strand, within Ga0059261_0067at 59.063 kb on - strand, within Ga0059261_0067at 59.063 kb on - strand, within Ga0059261_0067at 59.063 kb on - strand, within Ga0059261_0067at 59.064 kb on + strand, within Ga0059261_0067at 59.064 kb on + strand, within Ga0059261_0067at 59.064 kb on + strand, within Ga0059261_0067at 59.064 kb on + strand, within Ga0059261_0067at 59.065 kb on - strand, within Ga0059261_0067at 59.137 kb on + strandat 59.137 kb on + strandat 59.137 kb on + strandat 59.137 kb on + strandat 59.137 kb on + strandat 59.138 kb on - strandat 59.138 kb on - strandat 59.138 kb on - strandat 59.211 kb on + strandat 59.211 kb on + strandat 59.212 kb on - strandat 59.212 kb on - strandat 59.239 kb on + strandat 59.239 kb on + strandat 59.240 kb on - strandat 59.240 kb on - strandat 59.240 kb on - strandat 59.240 kb on - strandat 59.261 kb on + strandat 59.261 kb on + strandat 59.261 kb on + strandat 59.261 kb on + strandat 59.262 kb on - strandat 59.262 kb on - strandat 59.262 kb on - strandat 59.262 kb on - strandat 59.262 kb on - strandat 59.262 kb on - strandat 59.262 kb on - strandat 59.262 kb on - strandat 59.488 kb on + strand, within Ga0059261_0068at 59.489 kb on - strand, within Ga0059261_0068at 59.588 kb on + strand, within Ga0059261_0068at 59.588 kb on + strand, within Ga0059261_0068at 59.588 kb on + strand, within Ga0059261_0068at 59.588 kb on + strand, within Ga0059261_0068at 59.588 kb on + strand, within Ga0059261_0068at 59.589 kb on - strand, within Ga0059261_0068at 59.589 kb on - strand, within Ga0059261_0068at 59.589 kb on - strand, within Ga0059261_0068at 59.589 kb on - strand, within Ga0059261_0068at 59.590 kb on + strand, within Ga0059261_0068at 59.590 kb on + strand, within Ga0059261_0068at 59.591 kb on - strand, within Ga0059261_0068at 59.591 kb on - strand, within Ga0059261_0068at 59.591 kb on - strand, within Ga0059261_0068at 59.591 kb on - strand, within Ga0059261_0068at 59.747 kb on - strandat 60.109 kb on - strand, within Ga0059261_0068at 60.215 kb on - strand, within Ga0059261_0068at 60.226 kb on + strand, within Ga0059261_0068at 60.226 kb on + strand, within Ga0059261_0068at 60.226 kb on + strand, within Ga0059261_0068at 60.226 kb on + strand, within Ga0059261_0068at 60.226 kb on + strand, within Ga0059261_0068at 60.227 kb on - strand, within Ga0059261_0068at 60.227 kb on - strand, within Ga0059261_0068at 60.388 kb on + strand, within Ga0059261_0068at 60.388 kb on + strand, within Ga0059261_0068at 60.389 kb on - strand, within Ga0059261_0068at 60.389 kb on - strand, within Ga0059261_0068at 60.389 kb on - strand, within Ga0059261_0068at 60.389 kb on - strand, within Ga0059261_0068at 60.502 kb on + strand, within Ga0059261_0068at 60.503 kb on - strand, within Ga0059261_0068at 60.503 kb on - strand, within Ga0059261_0068at 60.503 kb on - strand, within Ga0059261_0068at 60.628 kb on + strand, within Ga0059261_0068at 60.629 kb on - strand, within Ga0059261_0068at 60.629 kb on - strand, within Ga0059261_0068at 60.629 kb on - strand, within Ga0059261_0068at 60.835 kb on + strand, within Ga0059261_0068at 60.835 kb on + strand, within Ga0059261_0068at 60.836 kb on - strand, within Ga0059261_0068at 60.888 kb on - strandat 60.917 kb on - strandat 60.917 kb on - strandat 60.927 kb on + strandat 60.928 kb on - strandat 60.928 kb on - strandat 60.928 kb on - strandat 61.019 kb on + strandat 61.019 kb on + strandat 61.019 kb on + strandat 61.019 kb on + strandat 61.019 kb on + strandat 61.020 kb on - strandat 61.020 kb on - strandat 61.020 kb on - strandat 61.020 kb on - strandat 61.020 kb on - strandat 61.020 kb on - strandat 61.050 kb on + strandat 61.199 kb on + strandat 61.199 kb on + strandat 61.199 kb on + strandat 61.199 kb on + strandat 61.199 kb on + strandat 61.199 kb on + strandat 61.200 kb on - strand, within Ga0059261_0069at 61.200 kb on - strand, within Ga0059261_0069at 61.200 kb on - strand, within Ga0059261_0069at 61.201 kb on + strand, within Ga0059261_0069at 61.217 kb on - strandat 61.275 kb on + strand, within Ga0059261_0069at 61.527 kb on + strand, within Ga0059261_0069at 61.615 kb on + strand, within Ga0059261_0069at 61.616 kb on - strand, within Ga0059261_0069at 61.616 kb on - strand, within Ga0059261_0069at 61.707 kb on - strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.708 kb on + strand, within Ga0059261_0069at 61.709 kb on - strand, within Ga0059261_0069at 61.709 kb on - strand, within Ga0059261_0069at 61.709 kb on - strand, within Ga0059261_0069at 61.709 kb on - strand, within Ga0059261_0069at 61.709 kb on - strand, within Ga0059261_0069at 61.709 kb on - strand, within Ga0059261_0069at 61.709 kb on - strand, within Ga0059261_0069at 61.709 kb on - strand, within Ga0059261_0069at 61.804 kb on + strand, within Ga0059261_0069at 61.805 kb on - strandat 61.805 kb on - strand, within Ga0059261_0069at 61.900 kb on + strandat 61.901 kb on - strand, within Ga0059261_0069at 61.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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58,560 - +0.6
58,560 - -0.7
58,562 + -4.2
58,562 + -5.2
58,563 - +1.4
58,563 - -0.1
58,818 + Ga0059261_0067 0.32 -3.6
58,818 + Ga0059261_0067 0.32 -4.2
58,819 - Ga0059261_0067 0.32 -4.9
58,819 - Ga0059261_0067 0.32 -3.7
59,032 + Ga0059261_0067 0.73 -5.8
59,059 + Ga0059261_0067 0.78 -5.1
59,060 - Ga0059261_0067 0.78 -3.8
59,060 - Ga0059261_0067 0.78 -4.3
59,060 - Ga0059261_0067 0.78 -5.6
59,062 + Ga0059261_0067 0.79 -3.0
59,062 + Ga0059261_0067 0.79 -4.6
59,062 + Ga0059261_0067 0.79 -5.7
59,063 - Ga0059261_0067 0.79 -5.7
59,063 - Ga0059261_0067 0.79 -5.4
59,063 - Ga0059261_0067 0.79 -5.3
59,063 - Ga0059261_0067 0.79 -3.9
59,064 + Ga0059261_0067 0.79 -3.5
59,064 + Ga0059261_0067 0.79 -2.8
59,064 + Ga0059261_0067 0.79 -2.9
59,064 + Ga0059261_0067 0.79 -1.8
59,065 - Ga0059261_0067 0.79 -6.1
59,137 + -5.9
59,137 + -3.1
59,137 + -3.4
59,137 + -2.8
59,137 + -3.6
59,138 - -5.4
59,138 - -1.0
59,138 - -2.1
59,211 + -4.6
59,211 + -1.4
59,212 - +0.4
59,212 - -0.2
59,239 + -5.1
59,239 + -2.4
59,240 - +0.5
59,240 - +0.9
59,240 - +0.2
59,240 - +1.0
59,261 + -2.8
59,261 + -3.1
59,261 + -4.8
59,261 + -3.5
59,262 - -1.2
59,262 - +0.5
59,262 - +0.2
59,262 - +0.3
59,262 - -0.1
59,262 - -0.1
59,262 - -0.2
59,262 - +0.6
59,488 + Ga0059261_0068 0.12 -3.4
59,489 - Ga0059261_0068 0.12 -4.2
59,588 + Ga0059261_0068 0.18 -5.0
59,588 + Ga0059261_0068 0.18 -3.3
59,588 + Ga0059261_0068 0.18 -4.1
59,588 + Ga0059261_0068 0.18 -3.3
59,588 + Ga0059261_0068 0.18 -5.3
59,589 - Ga0059261_0068 0.18 -2.2
59,589 - Ga0059261_0068 0.18 -3.1
59,589 - Ga0059261_0068 0.18 -5.0
59,589 - Ga0059261_0068 0.18 -2.6
59,590 + Ga0059261_0068 0.18 -5.3
59,590 + Ga0059261_0068 0.18 -4.7
59,591 - Ga0059261_0068 0.18 -3.9
59,591 - Ga0059261_0068 0.18 -4.5
59,591 - Ga0059261_0068 0.18 -4.5
59,591 - Ga0059261_0068 0.18 -3.1
59,747 - -1.9
60,109 - Ga0059261_0068 0.48 -3.6
60,215 - Ga0059261_0068 0.54 -3.5
60,226 + Ga0059261_0068 0.55 -3.2
60,226 + Ga0059261_0068 0.55 -4.0
60,226 + Ga0059261_0068 0.55 -5.5
60,226 + Ga0059261_0068 0.55 -2.1
60,226 + Ga0059261_0068 0.55 -2.7
60,227 - Ga0059261_0068 0.55 -4.5
60,227 - Ga0059261_0068 0.55 -6.0
60,388 + Ga0059261_0068 0.64 -5.0
60,388 + Ga0059261_0068 0.64 -3.8
60,389 - Ga0059261_0068 0.64 -5.2
60,389 - Ga0059261_0068 0.64 -4.5
60,389 - Ga0059261_0068 0.64 -2.4
60,389 - Ga0059261_0068 0.64 -5.0
60,502 + Ga0059261_0068 0.71 -3.2
60,503 - Ga0059261_0068 0.71 -3.9
60,503 - Ga0059261_0068 0.71 -5.7
60,503 - Ga0059261_0068 0.71 -3.5
60,628 + Ga0059261_0068 0.78 -5.3
60,629 - Ga0059261_0068 0.78 -3.9
60,629 - Ga0059261_0068 0.78 -2.8
60,629 - Ga0059261_0068 0.78 -4.4
60,835 + Ga0059261_0068 0.90 -3.6
60,835 + Ga0059261_0068 0.90 -2.4
60,836 - Ga0059261_0068 0.90 -3.4
60,888 - -5.6
60,917 - -2.5
60,917 - -5.6
60,927 + -3.4
60,928 - -2.8
60,928 - -0.3
60,928 - -3.8
61,019 + -3.6
61,019 + -5.0
61,019 + -4.2
61,019 + -2.5
61,019 + -3.7
61,020 - -5.5
61,020 - -4.9
61,020 - -2.6
61,020 - -5.8
61,020 - -2.4
61,020 - -4.7
61,050 + -5.2
61,199 + -1.0
61,199 + -2.0
61,199 + -0.3
61,199 + +0.7
61,199 + -0.5
61,199 + -1.6
61,200 - Ga0059261_0069 0.10 -1.4
61,200 - Ga0059261_0069 0.10 -0.3
61,200 - Ga0059261_0069 0.10 -1.0
61,201 + Ga0059261_0069 0.10 -0.3
61,217 - -1.0
61,275 + Ga0059261_0069 0.18 -1.3
61,527 + Ga0059261_0069 0.45 -0.7
61,615 + Ga0059261_0069 0.55 -0.4
61,616 - Ga0059261_0069 0.55 +0.2
61,616 - Ga0059261_0069 0.55 -0.1
61,707 - Ga0059261_0069 0.65 +0.5
61,708 + Ga0059261_0069 0.65 -0.1
61,708 + Ga0059261_0069 0.65 -1.2
61,708 + Ga0059261_0069 0.65 +0.2
61,708 + Ga0059261_0069 0.65 -3.4
61,708 + Ga0059261_0069 0.65 -0.8
61,708 + Ga0059261_0069 0.65 -1.1
61,708 + Ga0059261_0069 0.65 -1.4
61,708 + Ga0059261_0069 0.65 -2.2
61,708 + Ga0059261_0069 0.65 -1.2
61,709 - Ga0059261_0069 0.65 -1.8
61,709 - Ga0059261_0069 0.65 -1.0
61,709 - Ga0059261_0069 0.65 -0.1
61,709 - Ga0059261_0069 0.65 -1.3
61,709 - Ga0059261_0069 0.65 +0.7
61,709 - Ga0059261_0069 0.65 -0.2
61,709 - Ga0059261_0069 0.65 -0.9
61,709 - Ga0059261_0069 0.65 -1.6
61,804 + Ga0059261_0069 0.75 -1.2
61,805 - -1.4
61,805 - Ga0059261_0069 0.76 -0.2
61,900 + -0.3
61,901 - Ga0059261_0069 0.86 -1.9
61,901 - -2.3

Or see this region's nucleotide sequence