Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0064

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0062 and Ga0059261_0063 overlap by 4 nucleotidesGa0059261_0063 and Ga0059261_0064 overlap by 4 nucleotidesGa0059261_0064 and Ga0059261_0065 are separated by 11 nucleotides Ga0059261_0062: Ga0059261_0062 - hypothetical protein, at 54,402 to 54,854 _0062 Ga0059261_0063: Ga0059261_0063 - Ribonuclease I, at 54,851 to 55,549 _0063 Ga0059261_0064: Ga0059261_0064 - Domain of unknown function (DUF4112), at 55,546 to 55,965 _0064 Ga0059261_0065: Ga0059261_0065 - ABC-type dipeptide transport system, periplasmic component, at 55,977 to 57,485 _0065 Position (kb) 55 56Strain fitness (log2 ratio) -2 -1 0 1at 54.612 kb on + strand, within Ga0059261_0062at 54.612 kb on + strand, within Ga0059261_0062at 54.612 kb on + strand, within Ga0059261_0062at 54.613 kb on - strand, within Ga0059261_0062at 54.708 kb on + strand, within Ga0059261_0062at 54.708 kb on + strand, within Ga0059261_0062at 54.709 kb on - strand, within Ga0059261_0062at 54.709 kb on - strand, within Ga0059261_0062at 54.709 kb on - strand, within Ga0059261_0062at 55.003 kb on + strand, within Ga0059261_0063at 55.003 kb on + strand, within Ga0059261_0063at 55.003 kb on + strand, within Ga0059261_0063at 55.003 kb on + strandat 55.003 kb on + strand, within Ga0059261_0063at 55.004 kb on - strand, within Ga0059261_0063at 55.004 kb on - strand, within Ga0059261_0063at 55.004 kb on - strand, within Ga0059261_0063at 55.142 kb on + strand, within Ga0059261_0063at 55.143 kb on - strand, within Ga0059261_0063at 55.143 kb on - strandat 55.143 kb on - strandat 55.143 kb on - strand, within Ga0059261_0063at 55.229 kb on + strand, within Ga0059261_0063at 55.230 kb on - strand, within Ga0059261_0063at 55.230 kb on - strandat 55.230 kb on - strand, within Ga0059261_0063at 55.230 kb on - strand, within Ga0059261_0063at 55.230 kb on - strand, within Ga0059261_0063at 55.230 kb on - strand, within Ga0059261_0063at 55.230 kb on - strand, within Ga0059261_0063at 55.271 kb on + strand, within Ga0059261_0063at 55.272 kb on - strand, within Ga0059261_0063at 55.272 kb on - strand, within Ga0059261_0063at 55.295 kb on + strand, within Ga0059261_0063at 55.295 kb on + strand, within Ga0059261_0063at 55.296 kb on - strand, within Ga0059261_0063at 55.296 kb on - strand, within Ga0059261_0063at 55.296 kb on - strand, within Ga0059261_0063at 55.296 kb on - strand, within Ga0059261_0063at 55.311 kb on - strand, within Ga0059261_0063at 55.547 kb on + strandat 55.547 kb on + strandat 55.547 kb on + strandat 55.548 kb on - strandat 55.752 kb on + strand, within Ga0059261_0064at 55.752 kb on + strand, within Ga0059261_0064at 55.752 kb on + strand, within Ga0059261_0064at 55.753 kb on - strand, within Ga0059261_0064at 55.753 kb on - strand, within Ga0059261_0064at 55.753 kb on - strand, within Ga0059261_0064at 55.753 kb on - strand, within Ga0059261_0064at 55.754 kb on + strand, within Ga0059261_0064at 55.754 kb on + strand, within Ga0059261_0064at 55.754 kb on + strand, within Ga0059261_0064at 55.754 kb on + strand, within Ga0059261_0064at 55.754 kb on + strand, within Ga0059261_0064at 55.755 kb on - strand, within Ga0059261_0064at 55.755 kb on - strand, within Ga0059261_0064at 55.755 kb on - strand, within Ga0059261_0064at 55.755 kb on - strand, within Ga0059261_0064at 55.755 kb on - strand, within Ga0059261_0064at 55.755 kb on - strand, within Ga0059261_0064at 55.780 kb on - strand, within Ga0059261_0064at 55.780 kb on - strand, within Ga0059261_0064at 55.920 kb on - strand, within Ga0059261_0064at 55.920 kb on - strand, within Ga0059261_0064at 56.091 kb on - strandat 56.092 kb on + strandat 56.092 kb on + strandat 56.092 kb on + strandat 56.093 kb on - strandat 56.093 kb on - strandat 56.093 kb on - strandat 56.093 kb on - strandat 56.227 kb on + strand, within Ga0059261_0065at 56.228 kb on - strand, within Ga0059261_0065at 56.228 kb on - strand, within Ga0059261_0065at 56.245 kb on + strand, within Ga0059261_0065at 56.245 kb on + strand, within Ga0059261_0065at 56.245 kb on + strand, within Ga0059261_0065at 56.246 kb on - strand, within Ga0059261_0065at 56.246 kb on - strand, within Ga0059261_0065at 56.246 kb on - strand, within Ga0059261_0065at 56.731 kb on + strand, within Ga0059261_0065at 56.731 kb on + strand, within Ga0059261_0065at 56.731 kb on + strand, within Ga0059261_0065at 56.732 kb on - strand, within Ga0059261_0065

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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54,612 + Ga0059261_0062 0.46 -0.3
54,612 + Ga0059261_0062 0.46 +0.3
54,612 + Ga0059261_0062 0.46 -0.3
54,613 - Ga0059261_0062 0.47 -0.0
54,708 + Ga0059261_0062 0.68 +0.4
54,708 + Ga0059261_0062 0.68 +0.0
54,709 - Ga0059261_0062 0.68 -0.0
54,709 - Ga0059261_0062 0.68 -0.3
54,709 - Ga0059261_0062 0.68 -0.0
55,003 + Ga0059261_0063 0.22 +0.6
55,003 + Ga0059261_0063 0.22 -0.1
55,003 + Ga0059261_0063 0.22 +0.4
55,003 + +0.4
55,003 + Ga0059261_0063 0.22 -0.3
55,004 - Ga0059261_0063 0.22 -0.9
55,004 - Ga0059261_0063 0.22 +1.0
55,004 - Ga0059261_0063 0.22 +0.9
55,142 + Ga0059261_0063 0.42 -0.3
55,143 - Ga0059261_0063 0.42 +1.2
55,143 - +0.8
55,143 - -1.8
55,143 - Ga0059261_0063 0.42 -0.2
55,229 + Ga0059261_0063 0.54 +0.6
55,230 - Ga0059261_0063 0.54 -0.1
55,230 - +1.0
55,230 - Ga0059261_0063 0.54 -0.6
55,230 - Ga0059261_0063 0.54 -0.6
55,230 - Ga0059261_0063 0.54 -0.1
55,230 - Ga0059261_0063 0.54 +0.6
55,230 - Ga0059261_0063 0.54 +0.5
55,271 + Ga0059261_0063 0.60 +0.4
55,272 - Ga0059261_0063 0.60 -0.3
55,272 - Ga0059261_0063 0.60 +0.1
55,295 + Ga0059261_0063 0.64 -0.4
55,295 + Ga0059261_0063 0.64 +0.2
55,296 - Ga0059261_0063 0.64 -0.6
55,296 - Ga0059261_0063 0.64 +0.5
55,296 - Ga0059261_0063 0.64 +1.3
55,296 - Ga0059261_0063 0.64 +0.3
55,311 - Ga0059261_0063 0.66 -0.3
55,547 + +0.2
55,547 + -0.0
55,547 + +0.2
55,548 - -0.2
55,752 + Ga0059261_0064 0.49 -0.4
55,752 + Ga0059261_0064 0.49 +0.9
55,752 + Ga0059261_0064 0.49 -1.3
55,753 - Ga0059261_0064 0.49 +0.5
55,753 - Ga0059261_0064 0.49 +0.0
55,753 - Ga0059261_0064 0.49 +0.5
55,753 - Ga0059261_0064 0.49 +1.0
55,754 + Ga0059261_0064 0.50 -0.2
55,754 + Ga0059261_0064 0.50 +0.7
55,754 + Ga0059261_0064 0.50 -0.2
55,754 + Ga0059261_0064 0.50 +0.5
55,754 + Ga0059261_0064 0.50 +0.5
55,755 - Ga0059261_0064 0.50 +0.7
55,755 - Ga0059261_0064 0.50 +0.1
55,755 - Ga0059261_0064 0.50 -0.4
55,755 - Ga0059261_0064 0.50 -0.6
55,755 - Ga0059261_0064 0.50 -1.1
55,755 - Ga0059261_0064 0.50 +0.3
55,780 - Ga0059261_0064 0.56 +0.2
55,780 - Ga0059261_0064 0.56 -0.4
55,920 - Ga0059261_0064 0.89 -0.2
55,920 - Ga0059261_0064 0.89 +0.6
56,091 - +0.7
56,092 + +0.3
56,092 + +0.7
56,092 + +0.1
56,093 - -0.2
56,093 - +0.4
56,093 - +0.6
56,093 - -0.0
56,227 + Ga0059261_0065 0.17 +0.3
56,228 - Ga0059261_0065 0.17 -0.2
56,228 - Ga0059261_0065 0.17 +0.1
56,245 + Ga0059261_0065 0.18 +0.3
56,245 + Ga0059261_0065 0.18 +0.7
56,245 + Ga0059261_0065 0.18 +0.6
56,246 - Ga0059261_0065 0.18 +0.6
56,246 - Ga0059261_0065 0.18 +0.1
56,246 - Ga0059261_0065 0.18 -0.0
56,731 + Ga0059261_0065 0.50 +0.6
56,731 + Ga0059261_0065 0.50 +0.4
56,731 + Ga0059261_0065 0.50 -0.5
56,732 - Ga0059261_0065 0.50 -0.2

Or see this region's nucleotide sequence