Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21695

Experiment: Minimal media pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21690 and AO353_21695 are separated by 77 nucleotidesAO353_21695 and AO353_21700 are separated by 77 nucleotidesAO353_21700 and AO353_21705 are separated by 172 nucleotides AO353_21690: AO353_21690 - 2,4-dienoyl-CoA reductase, at 4,757,258 to 4,758,481 _21690 AO353_21695: AO353_21695 - MerR family transcriptional regulator, at 4,758,559 to 4,758,966 _21695 AO353_21700: AO353_21700 - thioredoxin, at 4,759,044 to 4,759,466 _21700 AO353_21705: AO353_21705 - hypothetical protein, at 4,759,639 to 4,760,052 _21705 Position (kb) 4758 4759Strain fitness (log2 ratio) -2 -1 0 1 2at 4757.643 kb on + strand, within AO353_21690at 4757.643 kb on + strand, within AO353_21690at 4757.644 kb on - strand, within AO353_21690at 4757.644 kb on - strand, within AO353_21690at 4757.644 kb on - strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.704 kb on - strand, within AO353_21690at 4757.704 kb on - strand, within AO353_21690at 4757.961 kb on + strand, within AO353_21690at 4757.962 kb on - strand, within AO353_21690at 4757.962 kb on - strand, within AO353_21690at 4758.266 kb on + strand, within AO353_21690at 4758.267 kb on - strand, within AO353_21690at 4758.267 kb on - strand, within AO353_21690at 4758.267 kb on - strand, within AO353_21690at 4758.267 kb on - strand, within AO353_21690at 4758.267 kb on - strand, within AO353_21690at 4758.267 kb on - strand, within AO353_21690at 4758.305 kb on + strand, within AO353_21690at 4758.305 kb on + strand, within AO353_21690at 4758.305 kb on + strand, within AO353_21690at 4758.305 kb on + strand, within AO353_21690at 4758.305 kb on + strand, within AO353_21690at 4758.306 kb on - strand, within AO353_21690at 4758.306 kb on - strand, within AO353_21690at 4758.306 kb on - strand, within AO353_21690at 4758.306 kb on - strand, within AO353_21690at 4758.306 kb on - strand, within AO353_21690at 4758.496 kb on + strandat 4758.497 kb on - strandat 4758.513 kb on + strandat 4758.519 kb on + strandat 4758.617 kb on - strand, within AO353_21695at 4759.191 kb on - strand, within AO353_21700at 4759.231 kb on + strand, within AO353_21700at 4759.231 kb on + strand, within AO353_21700at 4759.231 kb on + strand, within AO353_21700at 4759.286 kb on + strand, within AO353_21700at 4759.297 kb on + strand, within AO353_21700at 4759.297 kb on + strand, within AO353_21700at 4759.297 kb on + strand, within AO353_21700at 4759.297 kb on + strand, within AO353_21700at 4759.297 kb on + strand, within AO353_21700at 4759.298 kb on - strand, within AO353_21700at 4759.298 kb on - strand, within AO353_21700at 4759.298 kb on - strand, within AO353_21700at 4759.316 kb on + strand, within AO353_21700at 4759.317 kb on - strand, within AO353_21700at 4759.318 kb on + strand, within AO353_21700at 4759.318 kb on + strand, within AO353_21700at 4759.319 kb on - strand, within AO353_21700at 4759.319 kb on - strand, within AO353_21700at 4759.319 kb on - strand, within AO353_21700at 4759.342 kb on - strand, within AO353_21700at 4759.366 kb on + strand, within AO353_21700at 4759.366 kb on + strand, within AO353_21700at 4759.388 kb on - strand, within AO353_21700at 4759.388 kb on - strand, within AO353_21700at 4759.388 kb on - strand, within AO353_21700at 4759.406 kb on - strand, within AO353_21700at 4759.471 kb on + strandat 4759.472 kb on - strandat 4759.472 kb on - strandat 4759.502 kb on + strandat 4759.502 kb on + strandat 4759.502 kb on + strandat 4759.502 kb on + strandat 4759.502 kb on + strandat 4759.502 kb on + strandat 4759.502 kb on + strandat 4759.502 kb on + strandat 4759.502 kb on + strandat 4759.503 kb on - strandat 4759.503 kb on - strandat 4759.503 kb on - strandat 4759.503 kb on - strandat 4759.506 kb on + strandat 4759.506 kb on + strandat 4759.506 kb on + strandat 4759.506 kb on + strandat 4759.507 kb on - strandat 4759.507 kb on - strandat 4759.507 kb on - strandat 4759.562 kb on + strandat 4759.563 kb on - strandat 4759.563 kb on - strandat 4759.563 kb on - strandat 4759.570 kb on - strandat 4759.903 kb on - strand, within AO353_21705at 4759.915 kb on - strand, within AO353_21705at 4759.915 kb on - strand, within AO353_21705at 4759.915 kb on - strand, within AO353_21705at 4759.925 kb on + strand, within AO353_21705at 4759.926 kb on - strand, within AO353_21705at 4759.926 kb on - strand, within AO353_21705at 4759.944 kb on - strand, within AO353_21705at 4759.956 kb on - strand, within AO353_21705

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH8
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4,757,643 + AO353_21690 0.31 +0.4
4,757,643 + AO353_21690 0.31 +0.6
4,757,644 - AO353_21690 0.32 +0.1
4,757,644 - AO353_21690 0.32 +0.8
4,757,644 - AO353_21690 0.32 +1.0
4,757,703 + AO353_21690 0.36 -0.1
4,757,703 + AO353_21690 0.36 +1.8
4,757,703 + AO353_21690 0.36 -0.7
4,757,703 + AO353_21690 0.36 +0.4
4,757,703 + AO353_21690 0.36 -1.8
4,757,703 + AO353_21690 0.36 +0.7
4,757,703 + AO353_21690 0.36 +0.8
4,757,703 + AO353_21690 0.36 +0.7
4,757,704 - AO353_21690 0.36 -0.6
4,757,704 - AO353_21690 0.36 -1.9
4,757,961 + AO353_21690 0.57 -0.2
4,757,962 - AO353_21690 0.58 +0.4
4,757,962 - AO353_21690 0.58 +1.6
4,758,266 + AO353_21690 0.82 +0.3
4,758,267 - AO353_21690 0.82 +0.0
4,758,267 - AO353_21690 0.82 +0.6
4,758,267 - AO353_21690 0.82 +0.6
4,758,267 - AO353_21690 0.82 -0.3
4,758,267 - AO353_21690 0.82 +0.7
4,758,267 - AO353_21690 0.82 -0.3
4,758,305 + AO353_21690 0.86 -0.9
4,758,305 + AO353_21690 0.86 -0.5
4,758,305 + AO353_21690 0.86 +2.3
4,758,305 + AO353_21690 0.86 -0.6
4,758,305 + AO353_21690 0.86 -2.3
4,758,306 - AO353_21690 0.86 +1.0
4,758,306 - AO353_21690 0.86 -0.6
4,758,306 - AO353_21690 0.86 -0.4
4,758,306 - AO353_21690 0.86 -1.3
4,758,306 - AO353_21690 0.86 +0.7
4,758,496 + -0.5
4,758,497 - -0.0
4,758,513 + -1.3
4,758,519 + -0.7
4,758,617 - AO353_21695 0.14 +1.2
4,759,191 - AO353_21700 0.35 -1.8
4,759,231 + AO353_21700 0.44 +1.7
4,759,231 + AO353_21700 0.44 +0.4
4,759,231 + AO353_21700 0.44 +0.3
4,759,286 + AO353_21700 0.57 -0.5
4,759,297 + AO353_21700 0.60 -0.6
4,759,297 + AO353_21700 0.60 +0.8
4,759,297 + AO353_21700 0.60 +0.3
4,759,297 + AO353_21700 0.60 -0.7
4,759,297 + AO353_21700 0.60 +0.6
4,759,298 - AO353_21700 0.60 +0.6
4,759,298 - AO353_21700 0.60 +0.5
4,759,298 - AO353_21700 0.60 -0.2
4,759,316 + AO353_21700 0.64 -0.6
4,759,317 - AO353_21700 0.65 +0.7
4,759,318 + AO353_21700 0.65 +0.3
4,759,318 + AO353_21700 0.65 -0.7
4,759,319 - AO353_21700 0.65 -0.2
4,759,319 - AO353_21700 0.65 -0.3
4,759,319 - AO353_21700 0.65 -0.4
4,759,342 - AO353_21700 0.70 -2.4
4,759,366 + AO353_21700 0.76 +1.0
4,759,366 + AO353_21700 0.76 +0.4
4,759,388 - AO353_21700 0.81 +1.6
4,759,388 - AO353_21700 0.81 +0.3
4,759,388 - AO353_21700 0.81 -1.3
4,759,406 - AO353_21700 0.86 +0.1
4,759,471 + +0.7
4,759,472 - +1.3
4,759,472 - +1.8
4,759,502 + -1.6
4,759,502 + +0.9
4,759,502 + +0.5
4,759,502 + -1.9
4,759,502 + -0.1
4,759,502 + -0.6
4,759,502 + +1.0
4,759,502 + -0.7
4,759,502 + -0.4
4,759,503 - -1.0
4,759,503 - -0.5
4,759,503 - -1.2
4,759,503 - -0.9
4,759,506 + +0.8
4,759,506 + +0.2
4,759,506 + -1.3
4,759,506 + -2.3
4,759,507 - -0.0
4,759,507 - +1.0
4,759,507 - -0.0
4,759,562 + +0.3
4,759,563 - +0.8
4,759,563 - +0.1
4,759,563 - +0.9
4,759,570 - -0.4
4,759,903 - AO353_21705 0.64 -0.3
4,759,915 - AO353_21705 0.67 +0.1
4,759,915 - AO353_21705 0.67 +0.2
4,759,915 - AO353_21705 0.67 -1.1
4,759,925 + AO353_21705 0.69 +0.4
4,759,926 - AO353_21705 0.69 -0.4
4,759,926 - AO353_21705 0.69 +1.8
4,759,944 - AO353_21705 0.74 +1.5
4,759,956 - AO353_21705 0.77 +0.0

Or see this region's nucleotide sequence