Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21685

Experiment: Minimal media pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21680 and AO353_21685 are separated by 2 nucleotidesAO353_21685 and AO353_21690 are separated by 56 nucleotides AO353_21680: AO353_21680 - hypothetical protein, at 4,754,914 to 4,756,473 _21680 AO353_21685: AO353_21685 - hypothetical protein, at 4,756,476 to 4,757,201 _21685 AO353_21690: AO353_21690 - 2,4-dienoyl-CoA reductase, at 4,757,258 to 4,758,481 _21690 Position (kb) 4756 4757 4758Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4755.511 kb on + strand, within AO353_21680at 4755.553 kb on + strand, within AO353_21680at 4755.553 kb on + strand, within AO353_21680at 4755.553 kb on + strand, within AO353_21680at 4755.553 kb on + strand, within AO353_21680at 4755.553 kb on + strand, within AO353_21680at 4755.553 kb on + strand, within AO353_21680at 4755.553 kb on + strand, within AO353_21680at 4755.553 kb on + strand, within AO353_21680at 4755.554 kb on - strand, within AO353_21680at 4755.554 kb on - strand, within AO353_21680at 4755.554 kb on - strand, within AO353_21680at 4755.554 kb on - strand, within AO353_21680at 4755.844 kb on + strand, within AO353_21680at 4755.844 kb on + strand, within AO353_21680at 4755.844 kb on + strand, within AO353_21680at 4755.845 kb on - strand, within AO353_21680at 4755.846 kb on + strand, within AO353_21680at 4755.846 kb on + strand, within AO353_21680at 4755.846 kb on + strand, within AO353_21680at 4755.846 kb on + strand, within AO353_21680at 4755.846 kb on + strand, within AO353_21680at 4755.846 kb on + strand, within AO353_21680at 4755.846 kb on + strand, within AO353_21680at 4755.847 kb on - strand, within AO353_21680at 4755.847 kb on - strand, within AO353_21680at 4755.847 kb on - strand, within AO353_21680at 4755.847 kb on - strand, within AO353_21680at 4755.847 kb on - strand, within AO353_21680at 4755.850 kb on + strand, within AO353_21680at 4755.850 kb on + strand, within AO353_21680at 4755.850 kb on + strand, within AO353_21680at 4755.850 kb on + strand, within AO353_21680at 4755.850 kb on + strand, within AO353_21680at 4755.851 kb on - strand, within AO353_21680at 4755.851 kb on - strand, within AO353_21680at 4755.851 kb on - strand, within AO353_21680at 4755.859 kb on - strand, within AO353_21680at 4755.859 kb on - strand, within AO353_21680at 4755.944 kb on + strand, within AO353_21680at 4755.944 kb on + strand, within AO353_21680at 4755.945 kb on - strand, within AO353_21680at 4755.945 kb on - strand, within AO353_21680at 4756.027 kb on - strand, within AO353_21680at 4756.027 kb on - strand, within AO353_21680at 4756.027 kb on - strand, within AO353_21680at 4756.138 kb on + strand, within AO353_21680at 4756.138 kb on + strand, within AO353_21680at 4756.139 kb on - strand, within AO353_21680at 4756.139 kb on - strand, within AO353_21680at 4756.192 kb on + strand, within AO353_21680at 4756.192 kb on + strand, within AO353_21680at 4756.193 kb on - strand, within AO353_21680at 4756.240 kb on + strand, within AO353_21680at 4756.240 kb on + strand, within AO353_21680at 4756.240 kb on + strand, within AO353_21680at 4756.240 kb on + strand, within AO353_21680at 4756.241 kb on - strand, within AO353_21680at 4756.241 kb on - strand, within AO353_21680at 4756.241 kb on - strand, within AO353_21680at 4756.241 kb on - strand, within AO353_21680at 4756.241 kb on - strand, within AO353_21680at 4756.241 kb on - strand, within AO353_21680at 4756.485 kb on + strandat 4756.485 kb on + strandat 4756.485 kb on + strandat 4756.485 kb on + strandat 4756.485 kb on + strandat 4756.486 kb on - strandat 4756.486 kb on - strandat 4756.486 kb on - strandat 4756.486 kb on - strandat 4756.583 kb on + strand, within AO353_21685at 4756.620 kb on + strand, within AO353_21685at 4756.620 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.747 kb on + strand, within AO353_21685at 4756.747 kb on + strand, within AO353_21685at 4756.747 kb on + strand, within AO353_21685at 4756.747 kb on + strand, within AO353_21685at 4756.747 kb on + strand, within AO353_21685at 4756.747 kb on + strandat 4756.747 kb on + strand, within AO353_21685at 4756.748 kb on + strand, within AO353_21685at 4756.748 kb on - strand, within AO353_21685at 4756.748 kb on - strand, within AO353_21685at 4756.748 kb on - strand, within AO353_21685at 4756.748 kb on - strand, within AO353_21685at 4756.748 kb on - strand, within AO353_21685at 4756.748 kb on - strand, within AO353_21685at 4756.852 kb on + strand, within AO353_21685at 4756.904 kb on + strand, within AO353_21685at 4756.905 kb on - strand, within AO353_21685at 4757.006 kb on + strand, within AO353_21685at 4757.007 kb on - strand, within AO353_21685at 4757.007 kb on - strand, within AO353_21685at 4757.025 kb on + strand, within AO353_21685at 4757.026 kb on - strand, within AO353_21685at 4757.026 kb on - strand, within AO353_21685at 4757.026 kb on - strand, within AO353_21685at 4757.026 kb on - strand, within AO353_21685at 4757.026 kb on - strand, within AO353_21685at 4757.026 kb on - strand, within AO353_21685at 4757.227 kb on + strandat 4757.228 kb on - strandat 4757.246 kb on + strandat 4757.246 kb on + strandat 4757.247 kb on - strandat 4757.260 kb on - strandat 4757.304 kb on + strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.643 kb on + strand, within AO353_21690at 4757.643 kb on + strand, within AO353_21690at 4757.644 kb on - strand, within AO353_21690at 4757.644 kb on - strand, within AO353_21690at 4757.644 kb on - strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.704 kb on - strand, within AO353_21690at 4757.704 kb on - strand, within AO353_21690at 4757.961 kb on + strand, within AO353_21690at 4757.962 kb on - strand, within AO353_21690at 4757.962 kb on - strand, within AO353_21690

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH8
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4,755,511 + AO353_21680 0.38 -0.9
4,755,553 + AO353_21680 0.41 -0.0
4,755,553 + AO353_21680 0.41 +1.3
4,755,553 + AO353_21680 0.41 +0.4
4,755,553 + AO353_21680 0.41 +0.4
4,755,553 + AO353_21680 0.41 +1.0
4,755,553 + AO353_21680 0.41 +1.5
4,755,553 + AO353_21680 0.41 +1.2
4,755,553 + AO353_21680 0.41 +0.3
4,755,554 - AO353_21680 0.41 -1.0
4,755,554 - AO353_21680 0.41 -0.8
4,755,554 - AO353_21680 0.41 +0.9
4,755,554 - AO353_21680 0.41 -2.2
4,755,844 + AO353_21680 0.60 +0.1
4,755,844 + AO353_21680 0.60 -1.6
4,755,844 + AO353_21680 0.60 -1.4
4,755,845 - AO353_21680 0.60 +0.5
4,755,846 + AO353_21680 0.60 -0.9
4,755,846 + AO353_21680 0.60 -2.6
4,755,846 + AO353_21680 0.60 -1.1
4,755,846 + AO353_21680 0.60 +1.0
4,755,846 + AO353_21680 0.60 +1.0
4,755,846 + AO353_21680 0.60 -0.9
4,755,846 + AO353_21680 0.60 -0.6
4,755,847 - AO353_21680 0.60 -2.9
4,755,847 - AO353_21680 0.60 +1.8
4,755,847 - AO353_21680 0.60 -0.7
4,755,847 - AO353_21680 0.60 +0.0
4,755,847 - AO353_21680 0.60 -0.1
4,755,850 + AO353_21680 0.60 +0.5
4,755,850 + AO353_21680 0.60 -0.1
4,755,850 + AO353_21680 0.60 +0.4
4,755,850 + AO353_21680 0.60 +2.4
4,755,850 + AO353_21680 0.60 +0.1
4,755,851 - AO353_21680 0.60 -0.4
4,755,851 - AO353_21680 0.60 -0.4
4,755,851 - AO353_21680 0.60 +1.0
4,755,859 - AO353_21680 0.61 -1.3
4,755,859 - AO353_21680 0.61 -0.7
4,755,944 + AO353_21680 0.66 +0.3
4,755,944 + AO353_21680 0.66 -0.2
4,755,945 - AO353_21680 0.66 +0.8
4,755,945 - AO353_21680 0.66 -0.3
4,756,027 - AO353_21680 0.71 +0.1
4,756,027 - AO353_21680 0.71 +0.0
4,756,027 - AO353_21680 0.71 -3.4
4,756,138 + AO353_21680 0.78 +0.3
4,756,138 + AO353_21680 0.78 +0.1
4,756,139 - AO353_21680 0.79 +0.9
4,756,139 - AO353_21680 0.79 -1.6
4,756,192 + AO353_21680 0.82 -0.6
4,756,192 + AO353_21680 0.82 +0.8
4,756,193 - AO353_21680 0.82 +1.4
4,756,240 + AO353_21680 0.85 +0.3
4,756,240 + AO353_21680 0.85 +0.9
4,756,240 + AO353_21680 0.85 -0.6
4,756,240 + AO353_21680 0.85 +0.4
4,756,241 - AO353_21680 0.85 +1.0
4,756,241 - AO353_21680 0.85 +0.3
4,756,241 - AO353_21680 0.85 +1.6
4,756,241 - AO353_21680 0.85 +0.4
4,756,241 - AO353_21680 0.85 -0.7
4,756,241 - AO353_21680 0.85 -1.8
4,756,485 + +2.3
4,756,485 + -0.1
4,756,485 + -0.8
4,756,485 + +0.0
4,756,485 + +0.3
4,756,486 - -0.1
4,756,486 - -0.7
4,756,486 - -0.5
4,756,486 - +2.2
4,756,583 + AO353_21685 0.15 -1.3
4,756,620 + AO353_21685 0.20 -0.2
4,756,620 + AO353_21685 0.20 +1.6
4,756,743 + AO353_21685 0.37 -2.3
4,756,743 + AO353_21685 0.37 -1.8
4,756,743 + AO353_21685 0.37 +0.7
4,756,743 + AO353_21685 0.37 +0.0
4,756,743 + AO353_21685 0.37 +0.6
4,756,743 + AO353_21685 0.37 -0.4
4,756,743 + AO353_21685 0.37 -1.0
4,756,743 + AO353_21685 0.37 -0.1
4,756,743 + AO353_21685 0.37 +0.5
4,756,743 + AO353_21685 0.37 +0.5
4,756,743 + AO353_21685 0.37 -1.4
4,756,743 + AO353_21685 0.37 -0.5
4,756,744 - AO353_21685 0.37 +1.0
4,756,744 - AO353_21685 0.37 +2.0
4,756,744 - AO353_21685 0.37 -2.7
4,756,744 - AO353_21685 0.37 -0.3
4,756,744 - AO353_21685 0.37 -0.1
4,756,744 - AO353_21685 0.37 -0.9
4,756,744 - AO353_21685 0.37 +0.9
4,756,744 - AO353_21685 0.37 +0.2
4,756,744 - AO353_21685 0.37 -0.3
4,756,744 - AO353_21685 0.37 -0.3
4,756,744 - AO353_21685 0.37 +0.3
4,756,744 - AO353_21685 0.37 -1.6
4,756,744 - AO353_21685 0.37 +1.6
4,756,744 - AO353_21685 0.37 +0.6
4,756,744 - AO353_21685 0.37 +0.2
4,756,744 - AO353_21685 0.37 +1.5
4,756,744 - AO353_21685 0.37 -0.2
4,756,744 - AO353_21685 0.37 -0.2
4,756,744 - AO353_21685 0.37 -0.5
4,756,744 - AO353_21685 0.37 +0.5
4,756,744 - AO353_21685 0.37 -2.0
4,756,744 - AO353_21685 0.37 -1.5
4,756,744 - AO353_21685 0.37 -0.2
4,756,744 - AO353_21685 0.37 -0.4
4,756,744 - AO353_21685 0.37 -1.4
4,756,744 - AO353_21685 0.37 -0.4
4,756,744 - AO353_21685 0.37 +0.8
4,756,744 - AO353_21685 0.37 +0.5
4,756,747 + AO353_21685 0.37 +1.0
4,756,747 + AO353_21685 0.37 +0.6
4,756,747 + AO353_21685 0.37 +0.5
4,756,747 + AO353_21685 0.37 -0.4
4,756,747 + AO353_21685 0.37 -1.7
4,756,747 + +0.4
4,756,747 + AO353_21685 0.37 -1.4
4,756,748 + AO353_21685 0.37 -0.2
4,756,748 - AO353_21685 0.37 -0.3
4,756,748 - AO353_21685 0.37 +0.1
4,756,748 - AO353_21685 0.37 -1.3
4,756,748 - AO353_21685 0.37 -0.2
4,756,748 - AO353_21685 0.37 -0.2
4,756,748 - AO353_21685 0.37 -0.3
4,756,852 + AO353_21685 0.52 -0.4
4,756,904 + AO353_21685 0.59 +1.1
4,756,905 - AO353_21685 0.59 +0.0
4,757,006 + AO353_21685 0.73 -0.6
4,757,007 - AO353_21685 0.73 +0.0
4,757,007 - AO353_21685 0.73 -1.1
4,757,025 + AO353_21685 0.76 -0.3
4,757,026 - AO353_21685 0.76 -0.9
4,757,026 - AO353_21685 0.76 +0.6
4,757,026 - AO353_21685 0.76 +0.8
4,757,026 - AO353_21685 0.76 +0.1
4,757,026 - AO353_21685 0.76 +0.3
4,757,026 - AO353_21685 0.76 +0.7
4,757,227 + -0.1
4,757,228 - -0.3
4,757,246 + -2.6
4,757,246 + -2.7
4,757,247 - -2.0
4,757,260 - -0.3
4,757,304 + -0.1
4,757,305 - +0.2
4,757,305 - +0.7
4,757,305 - +0.0
4,757,305 - -0.9
4,757,305 - +0.9
4,757,305 - +0.8
4,757,305 - -0.4
4,757,305 - +0.2
4,757,305 - -0.1
4,757,305 - -0.2
4,757,305 - -1.0
4,757,643 + AO353_21690 0.31 +0.4
4,757,643 + AO353_21690 0.31 +0.6
4,757,644 - AO353_21690 0.32 +0.1
4,757,644 - AO353_21690 0.32 +0.8
4,757,644 - AO353_21690 0.32 +1.0
4,757,703 + AO353_21690 0.36 -0.1
4,757,703 + AO353_21690 0.36 +1.8
4,757,703 + AO353_21690 0.36 -0.7
4,757,703 + AO353_21690 0.36 +0.4
4,757,703 + AO353_21690 0.36 -1.8
4,757,703 + AO353_21690 0.36 +0.7
4,757,703 + AO353_21690 0.36 +0.8
4,757,703 + AO353_21690 0.36 +0.7
4,757,704 - AO353_21690 0.36 -0.6
4,757,704 - AO353_21690 0.36 -1.9
4,757,961 + AO353_21690 0.57 -0.2
4,757,962 - AO353_21690 0.58 +0.4
4,757,962 - AO353_21690 0.58 +1.6

Or see this region's nucleotide sequence