Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3648 and Shew_3649 are separated by 28 nucleotides Shew_3649 and Shew_3650 are separated by 5 nucleotides Shew_3650 and Shew_3651 overlap by 1 nucleotides
Shew_3648: Shew_3648 - hypothetical protein (RefSeq), at 4,349,816 to 4,350,655
_3648
Shew_3649: Shew_3649 - hypothetical protein (RefSeq), at 4,350,684 to 4,351,046
_3649
Shew_3650: Shew_3650 - lytic transglycosylase, catalytic (RefSeq), at 4,351,052 to 4,351,783
_3650
Shew_3651: Shew_3651 - hypothetical protein (RefSeq), at 4,351,783 to 4,352,793
_3651
Position (kb) 4350
4351
4352 Strain fitness (log2 ratio) -2
-1
0
1 at 4349.795 kb on - strand at 4349.955 kb on + strand, within Shew_3648 at 4350.027 kb on + strand, within Shew_3648 at 4350.027 kb on + strand, within Shew_3648 at 4350.108 kb on - strand, within Shew_3648 at 4350.185 kb on - strand, within Shew_3648 at 4350.254 kb on + strand, within Shew_3648 at 4350.363 kb on - strand, within Shew_3648 at 4350.644 kb on - strand at 4350.805 kb on - strand, within Shew_3649 at 4350.908 kb on + strand, within Shew_3649 at 4350.908 kb on + strand, within Shew_3649 at 4350.915 kb on - strand, within Shew_3649 at 4350.998 kb on + strand, within Shew_3649 at 4350.998 kb on + strand, within Shew_3649 at 4350.998 kb on + strand, within Shew_3649 at 4351.003 kb on + strand, within Shew_3649 at 4351.006 kb on - strand, within Shew_3649 at 4351.006 kb on - strand, within Shew_3649 at 4351.011 kb on - strand at 4351.052 kb on - strand at 4351.078 kb on + strand at 4351.101 kb on - strand at 4351.111 kb on - strand at 4351.112 kb on - strand at 4351.131 kb on + strand, within Shew_3650 at 4351.392 kb on - strand, within Shew_3650 at 4351.396 kb on + strand, within Shew_3650 at 4351.520 kb on - strand, within Shew_3650 at 4351.568 kb on - strand, within Shew_3650 at 4351.621 kb on + strand, within Shew_3650 at 4351.634 kb on + strand, within Shew_3650 at 4351.722 kb on - strand at 4351.722 kb on - strand at 4351.805 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 4,349,795 - -2.0 4,349,955 + Shew_3648 0.17 +0.4 4,350,027 + Shew_3648 0.25 +0.2 4,350,027 + Shew_3648 0.25 -0.3 4,350,108 - Shew_3648 0.35 -0.0 4,350,185 - Shew_3648 0.44 -0.1 4,350,254 + Shew_3648 0.52 +0.9 4,350,363 - Shew_3648 0.65 +0.3 4,350,644 - -0.5 4,350,805 - Shew_3649 0.33 +0.1 4,350,908 + Shew_3649 0.62 -0.7 4,350,908 + Shew_3649 0.62 -0.4 4,350,915 - Shew_3649 0.64 -0.2 4,350,998 + Shew_3649 0.87 -0.5 4,350,998 + Shew_3649 0.87 -0.3 4,350,998 + Shew_3649 0.87 +0.0 4,351,003 + Shew_3649 0.88 +0.5 4,351,006 - Shew_3649 0.89 +0.0 4,351,006 - Shew_3649 0.89 -2.2 4,351,011 - -0.6 4,351,052 - -0.1 4,351,078 + +0.2 4,351,101 - -0.1 4,351,111 - +0.3 4,351,112 - +0.6 4,351,131 + Shew_3650 0.11 +0.6 4,351,392 - Shew_3650 0.46 +0.5 4,351,396 + Shew_3650 0.47 +0.9 4,351,520 - Shew_3650 0.64 -0.6 4,351,568 - Shew_3650 0.70 -0.3 4,351,621 + Shew_3650 0.78 +0.3 4,351,634 + Shew_3650 0.80 +0.1 4,351,722 - +0.4 4,351,722 - +0.1 4,351,805 + -0.4
Or see this region's nucleotide sequence