Strain Fitness in Shewanella loihica PV-4 around Shew_3639

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
4,338,845	+	envZ	Shew_3638	0.37	-2.4
4,338,991	-	envZ	Shew_3638	0.48	-3.7
4,339,013	-	envZ	Shew_3638	0.50	-2.2
4,339,053	+	envZ	Shew_3638	0.53	-5.2
4,339,053	+	envZ	Shew_3638	0.53	-4.1
4,339,053	+	envZ	Shew_3638	0.53	-3.7
4,339,053	+	envZ	Shew_3638	0.53	-2.9
4,339,053	+	envZ	Shew_3638	0.53	-2.7
4,339,061	-	envZ	Shew_3638	0.53	-2.4
4,339,099	+	envZ	Shew_3638	0.56	-3.6
4,339,107	-	envZ	Shew_3638	0.57	-3.5
4,339,176	-	envZ	Shew_3638	0.62	-3.8
4,339,241	+	envZ	Shew_3638	0.67	-3.6
4,339,251	+	envZ	Shew_3638	0.68	-4.1
4,339,283	-	envZ	Shew_3638	0.70	-3.2
4,339,287	+	envZ	Shew_3638	0.70	-2.4
4,339,295	-	envZ	Shew_3638	0.71	-1.7
4,339,561	+				-3.5
4,339,561	+				-3.7
4,339,561	+				-1.8
4,339,691	+				-0.3
4,339,882	+				+0.8
4,339,890	-				-0.2
4,340,057	-		Shew_3639	0.12	-0.7
4,340,233	-		Shew_3639	0.21	+0.3
4,340,296	-		Shew_3639	0.24	-0.3
4,340,454	+		Shew_3639	0.32	-2.5
4,340,561	+		Shew_3639	0.38	-0.5
4,340,729	-		Shew_3639	0.46	-1.6
4,341,007	-		Shew_3639	0.60	-0.3
4,341,047	-		Shew_3639	0.62	+0.1
4,341,054	+		Shew_3639	0.63	-0.3
4,341,062	-		Shew_3639	0.63	+0.1
4,341,064	+		Shew_3639	0.63	-0.0
4,341,134	+		Shew_3639	0.67	+0.2
4,341,503	+		Shew_3639	0.86	+0.8
4,341,513	+		Shew_3639	0.86	-0.1
4,341,656	+				-0.2
4,341,792	-				+0.9
4,341,792	+				+0.2
4,341,921	+				+0.6
4,341,984	+		Shew_3640	0.11	+1.0
4,342,051	+		Shew_3640	0.19	+0.1
4,342,265	-		Shew_3640	0.45	-0.2
4,342,373	+		Shew_3640	0.57	-0.4
4,342,452	+		Shew_3640	0.67	-0.3
4,342,573	-		Shew_3640	0.81	-0.9
4,342,573	-		Shew_3640	0.81	+0.1
4,342,588	+		Shew_3640	0.83	-0.0
4,342,588	+		Shew_3640	0.83	+0.1
4,342,588	+		Shew_3640	0.83	+0.9
4,342,588	+		Shew_3640	0.83	+0.3
4,342,596	-		Shew_3640	0.84	+0.5
4,342,613	-		Shew_3640	0.86	-0.2
4,342,740	+				+0.3