Strain Fitness in Shewanella loihica PV-4 around Shew_3032
Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Tetracycline 0.0004 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 3,600,452 | + | Shew_3031 | 0.52 | +0.0 | |
| 3,600,643 | - | Shew_3031 | 0.66 | -1.1 | |
| 3,600,831 | - | Shew_3031 | 0.79 | -0.2 | |
| 3,600,897 | - | Shew_3031 | 0.84 | -0.1 | |
| 3,601,048 | - | +0.1 | |||
| 3,601,147 | + | -0.1 | |||
| 3,601,391 | + | Shew_3032 | 0.19 | +0.3 | |
| 3,601,438 | - | Shew_3032 | 0.28 | +1.0 | |
| 3,601,608 | + | Shew_3032 | 0.63 | +0.3 | |
| 3,601,625 | + | Shew_3032 | 0.67 | +0.5 | |
| 3,601,710 | + | Shew_3032 | 0.84 | +0.4 | |
| 3,602,125 | + | +0.1 | |||
| 3,602,443 | + | Shew_3033 | 0.24 | +2.9 | |
| 3,602,535 | + | Shew_3033 | 0.28 | -0.5 | |
| 3,602,620 | - | Shew_3033 | 0.32 | -0.7 |
Or see this region's nucleotide sequence