Strain Fitness in Shewanella loihica PV-4 around Shew_3032

Experiment: Tetracycline 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3031 and Shew_3032 are separated by 185 nucleotidesShew_3032 and Shew_3033 are separated by 140 nucleotides Shew_3031: Shew_3031 - phosphoesterase, PA-phosphatase related (RefSeq), at 3,599,732 to 3,601,114 _3031 Shew_3032: Shew_3032 - hypothetical protein (RefSeq), at 3,601,300 to 3,601,785 _3032 Shew_3033: Shew_3033 - hypothetical protein (RefSeq), at 3,601,926 to 3,604,112 _3033 Position (kb) 3601 3602Strain fitness (log2 ratio) -1 0 1 2 3at 3600.452 kb on + strand, within Shew_3031at 3600.643 kb on - strand, within Shew_3031at 3600.831 kb on - strand, within Shew_3031at 3600.897 kb on - strand, within Shew_3031at 3601.048 kb on - strandat 3601.147 kb on + strandat 3601.391 kb on + strand, within Shew_3032at 3601.438 kb on - strand, within Shew_3032at 3601.608 kb on + strand, within Shew_3032at 3601.625 kb on + strand, within Shew_3032at 3601.710 kb on + strand, within Shew_3032at 3602.125 kb on + strandat 3602.443 kb on + strand, within Shew_3033at 3602.535 kb on + strand, within Shew_3033at 3602.620 kb on - strand, within Shew_3033

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml
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3,600,452 + Shew_3031 0.52 +0.0
3,600,643 - Shew_3031 0.66 -1.1
3,600,831 - Shew_3031 0.79 -0.2
3,600,897 - Shew_3031 0.84 -0.1
3,601,048 - +0.1
3,601,147 + -0.1
3,601,391 + Shew_3032 0.19 +0.3
3,601,438 - Shew_3032 0.28 +1.0
3,601,608 + Shew_3032 0.63 +0.3
3,601,625 + Shew_3032 0.67 +0.5
3,601,710 + Shew_3032 0.84 +0.4
3,602,125 + +0.1
3,602,443 + Shew_3033 0.24 +2.9
3,602,535 + Shew_3033 0.28 -0.5
3,602,620 - Shew_3033 0.32 -0.7

Or see this region's nucleotide sequence