Strain Fitness in Shewanella loihica PV-4 around Shew_2437

Experiment: Tetracycline 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2436 and Shew_2437 are separated by 105 nucleotidesShew_2437 and Shew_2438 are separated by 74 nucleotidesShew_2438 and Shew_2439 are separated by 114 nucleotides Shew_2436: Shew_2436 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 2,863,837 to 2,865,153 _2436 Shew_2437: Shew_2437 - hypothetical protein (RefSeq), at 2,865,259 to 2,865,645 _2437 Shew_2438: Shew_2438 - hypothetical protein (RefSeq), at 2,865,720 to 2,866,430 _2438 Shew_2439: Shew_2439 - RND family efflux transporter MFP subunit (RefSeq), at 2,866,545 to 2,867,561 _2439 Position (kb) 2865 2866Strain fitness (log2 ratio) -2 -1 0 1at 2864.308 kb on - strand, within Shew_2436at 2864.841 kb on + strand, within Shew_2436at 2864.859 kb on + strand, within Shew_2436at 2865.125 kb on + strandat 2865.125 kb on + strandat 2865.247 kb on - strandat 2865.381 kb on - strand, within Shew_2437at 2865.642 kb on - strandat 2866.051 kb on - strand, within Shew_2438

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml
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2,864,308 - Shew_2436 0.36 -1.8
2,864,841 + Shew_2436 0.76 -1.4
2,864,859 + Shew_2436 0.78 -1.4
2,865,125 + -1.1
2,865,125 + -1.2
2,865,247 - -0.3
2,865,381 - Shew_2437 0.32 -2.6
2,865,642 - -0.3
2,866,051 - Shew_2438 0.47 -0.4

Or see this region's nucleotide sequence