Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0820 and Shew_0821 are separated by 156 nucleotides Shew_0821 and Shew_0822 are separated by 66 nucleotides Shew_0822 and Shew_0823 are separated by 246 nucleotides
Shew_0820: Shew_0820 - hypothetical protein (RefSeq), at 943,663 to 944,850
_0820
Shew_0821: Shew_0821 - mitomycin resistance protein (RefSeq), at 945,007 to 945,294
_0821
Shew_0822: Shew_0822 - lysine exporter protein LysE/YggA (RefSeq), at 945,361 to 945,954
_0822
Shew_0823: Shew_0823 - LysR family transcriptional regulator (RefSeq), at 946,201 to 947,106
_0823
Position (kb) 945
946 Strain fitness (log2 ratio) -1
0
1 at 944.701 kb on + strand, within Shew_0820 at 945.195 kb on + strand, within Shew_0821 at 945.535 kb on + strand, within Shew_0822 at 945.758 kb on + strand, within Shew_0822 at 945.888 kb on + strand, within Shew_0822 at 946.073 kb on + strand at 946.086 kb on + strand at 946.093 kb on - strand at 946.225 kb on - strand at 946.430 kb on + strand, within Shew_0823 at 946.678 kb on - strand, within Shew_0823 at 946.792 kb on + strand, within Shew_0823 at 946.935 kb on + strand, within Shew_0823
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 944,701 + Shew_0820 0.87 -0.4 945,195 + Shew_0821 0.65 +0.2 945,535 + Shew_0822 0.29 -0.5 945,758 + Shew_0822 0.67 -0.2 945,888 + Shew_0822 0.89 -0.3 946,073 + -1.0 946,086 + -0.4 946,093 - +0.2 946,225 - +0.2 946,430 + Shew_0823 0.25 -0.0 946,678 - Shew_0823 0.53 -0.2 946,792 + Shew_0823 0.65 +0.2 946,935 + Shew_0823 0.81 +0.4
Or see this region's nucleotide sequence