Strain Fitness in Shewanella loihica PV-4 around Shew_0739

Experiment: Tetracycline 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0738 and Shew_0739 are separated by 410 nucleotidesShew_0739 and Shew_0740 are separated by 56 nucleotides Shew_0738: Shew_0738 - NTPase (RefSeq), at 839,701 to 840,318 _0738 Shew_0739: Shew_0739 - aromatic amino acid permease (RefSeq), at 840,729 to 842,000 _0739 Shew_0740: Shew_0740 - L-serine dehydratase 1 (RefSeq), at 842,057 to 843,424 _0740 Position (kb) 840 841 842 843Strain fitness (log2 ratio) -2 -1 0 1 2at 839.862 kb on + strand, within Shew_0738at 840.257 kb on - strandat 840.410 kb on + strandat 841.033 kb on - strand, within Shew_0739at 841.065 kb on - strand, within Shew_0739at 841.078 kb on - strand, within Shew_0739at 841.519 kb on - strand, within Shew_0739at 841.531 kb on + strand, within Shew_0739at 841.565 kb on - strand, within Shew_0739at 841.584 kb on - strand, within Shew_0739at 841.871 kb on - strand, within Shew_0739at 842.059 kb on + strandat 842.087 kb on + strandat 842.096 kb on - strandat 842.363 kb on - strand, within Shew_0740at 842.557 kb on - strand, within Shew_0740at 842.864 kb on - strand, within Shew_0740at 842.984 kb on - strand, within Shew_0740

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml
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839,862 + Shew_0738 0.26 -1.8
840,257 - -0.0
840,410 + +0.7
841,033 - Shew_0739 0.24 -0.1
841,065 - Shew_0739 0.26 +0.5
841,078 - Shew_0739 0.27 +0.6
841,519 - Shew_0739 0.62 +0.1
841,531 + Shew_0739 0.63 -0.1
841,565 - Shew_0739 0.66 -0.3
841,584 - Shew_0739 0.67 +2.3
841,871 - Shew_0739 0.90 +0.1
842,059 + +0.3
842,087 + +0.2
842,096 - -0.2
842,363 - Shew_0740 0.22 -0.1
842,557 - Shew_0740 0.37 +0.3
842,864 - Shew_0740 0.59 +0.3
842,984 - Shew_0740 0.68 +1.3

Or see this region's nucleotide sequence