Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0635 and Shew_0636 are separated by 137 nucleotides Shew_0636 and Shew_0637 are separated by 29 nucleotides Shew_0637 and Shew_0638 are separated by 182 nucleotides
Shew_0635: Shew_0635 - hypothetical protein (RefSeq), at 722,474 to 723,169
_0635
Shew_0636: Shew_0636 - hypothetical protein (RefSeq), at 723,307 to 723,765
_0636
Shew_0637: Shew_0637 - hypothetical protein (RefSeq), at 723,795 to 724,472
_0637
Shew_0638: Shew_0638 - cell surface receptor IPT/TIG domain-containing protein (RefSeq), at 724,655 to 728,878
_0638
Position (kb) 723
724 Strain fitness (log2 ratio) -1
0
1 at 722.473 kb on + strand at 722.546 kb on - strand, within Shew_0635 at 722.627 kb on + strand, within Shew_0635 at 722.655 kb on - strand, within Shew_0635 at 722.655 kb on - strand, within Shew_0635 at 722.920 kb on + strand, within Shew_0635 at 723.496 kb on - strand, within Shew_0636 at 723.649 kb on + strand, within Shew_0636 at 723.662 kb on - strand, within Shew_0636 at 723.755 kb on + strand at 724.451 kb on + strand at 724.496 kb on + strand at 724.676 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 722,473 + -1.3 722,546 - Shew_0635 0.10 +0.0 722,627 + Shew_0635 0.22 +0.0 722,655 - Shew_0635 0.26 +0.1 722,655 - Shew_0635 0.26 -0.0 722,920 + Shew_0635 0.64 +0.4 723,496 - Shew_0636 0.41 -0.3 723,649 + Shew_0636 0.75 -1.4 723,662 - Shew_0636 0.77 -0.8 723,755 + +0.1 724,451 + +0.1 724,496 + +0.2 724,676 + -0.1
Or see this region's nucleotide sequence