Strain Fitness in Shewanella loihica PV-4 around Shew_0610

Experiment: Tetracycline 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0609 and Shew_0610 are separated by 203 nucleotidesShew_0610 and Shew_0611 are separated by 392 nucleotides Shew_0609: Shew_0609 - two component LuxR family transcriptional regulator (RefSeq), at 689,031 to 689,630 _0609 Shew_0610: Shew_0610 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 689,834 to 691,714 _0610 Shew_0611: Shew_0611 - hypothetical protein (RefSeq), at 692,107 to 692,814 _0611 Position (kb) 689 690 691 692Strain fitness (log2 ratio) -2 -1 0 1 2 3at 688.869 kb on + strandat 689.090 kb on + strandat 689.198 kb on + strand, within Shew_0609at 689.392 kb on - strand, within Shew_0609at 689.549 kb on + strand, within Shew_0609at 689.557 kb on - strand, within Shew_0609at 689.679 kb on + strandat 689.687 kb on - strandat 689.808 kb on - strandat 690.174 kb on + strand, within Shew_0610at 690.496 kb on + strand, within Shew_0610at 690.496 kb on + strand, within Shew_0610at 690.504 kb on - strand, within Shew_0610at 690.612 kb on - strand, within Shew_0610at 690.723 kb on - strand, within Shew_0610at 690.735 kb on - strand, within Shew_0610at 690.784 kb on + strand, within Shew_0610at 690.792 kb on - strand, within Shew_0610at 690.808 kb on + strand, within Shew_0610at 690.818 kb on + strand, within Shew_0610at 690.818 kb on + strand, within Shew_0610at 690.945 kb on - strand, within Shew_0610at 690.985 kb on + strand, within Shew_0610at 690.985 kb on + strand, within Shew_0610at 691.025 kb on - strand, within Shew_0610at 691.193 kb on - strand, within Shew_0610at 691.366 kb on + strand, within Shew_0610at 691.675 kb on - strandat 691.818 kb on - strandat 691.818 kb on - strandat 691.918 kb on + strandat 691.961 kb on + strandat 692.063 kb on + strandat 692.084 kb on - strandat 692.085 kb on - strandat 692.104 kb on + strandat 692.202 kb on - strand, within Shew_0611at 692.208 kb on + strand, within Shew_0611at 692.208 kb on + strand, within Shew_0611at 692.208 kb on + strand, within Shew_0611at 692.208 kb on + strand, within Shew_0611at 692.216 kb on - strand, within Shew_0611at 692.216 kb on - strand, within Shew_0611at 692.216 kb on - strand, within Shew_0611at 692.216 kb on - strand, within Shew_0611at 692.247 kb on - strand, within Shew_0611at 692.270 kb on + strand, within Shew_0611at 692.272 kb on + strand, within Shew_0611at 692.280 kb on - strand, within Shew_0611at 692.283 kb on + strand, within Shew_0611at 692.296 kb on + strand, within Shew_0611at 692.354 kb on + strand, within Shew_0611at 692.362 kb on - strand, within Shew_0611at 692.362 kb on - strand, within Shew_0611at 692.386 kb on + strand, within Shew_0611at 692.396 kb on + strand, within Shew_0611at 692.396 kb on + strand, within Shew_0611at 692.399 kb on - strand, within Shew_0611at 692.417 kb on + strand, within Shew_0611at 692.417 kb on + strand, within Shew_0611at 692.417 kb on + strand, within Shew_0611at 692.417 kb on + strand, within Shew_0611at 692.424 kb on + strand, within Shew_0611at 692.425 kb on - strand, within Shew_0611at 692.425 kb on - strand, within Shew_0611at 692.425 kb on - strand, within Shew_0611at 692.425 kb on - strand, within Shew_0611at 692.429 kb on + strand, within Shew_0611at 692.429 kb on + strand, within Shew_0611at 692.429 kb on + strand, within Shew_0611at 692.429 kb on + strand, within Shew_0611at 692.429 kb on + strand, within Shew_0611at 692.429 kb on + strand, within Shew_0611at 692.429 kb on + strand, within Shew_0611at 692.437 kb on - strand, within Shew_0611at 692.437 kb on - strand, within Shew_0611at 692.437 kb on - strand, within Shew_0611at 692.453 kb on + strand, within Shew_0611at 692.465 kb on + strand, within Shew_0611at 692.465 kb on + strand, within Shew_0611at 692.465 kb on + strand, within Shew_0611at 692.465 kb on + strand, within Shew_0611at 692.465 kb on + strand, within Shew_0611at 692.465 kb on + strand, within Shew_0611at 692.466 kb on - strand, within Shew_0611at 692.472 kb on + strand, within Shew_0611at 692.472 kb on + strand, within Shew_0611at 692.473 kb on - strand, within Shew_0611at 692.473 kb on - strand, within Shew_0611at 692.473 kb on - strand, within Shew_0611at 692.473 kb on - strand, within Shew_0611at 692.473 kb on - strand, within Shew_0611at 692.480 kb on - strand, within Shew_0611at 692.480 kb on - strand, within Shew_0611at 692.480 kb on - strand, within Shew_0611at 692.531 kb on - strand, within Shew_0611at 692.540 kb on - strand, within Shew_0611at 692.545 kb on - strand, within Shew_0611at 692.581 kb on + strand, within Shew_0611at 692.587 kb on - strand, within Shew_0611at 692.589 kb on + strand, within Shew_0611at 692.589 kb on + strand, within Shew_0611at 692.589 kb on + strand, within Shew_0611at 692.589 kb on + strand, within Shew_0611at 692.594 kb on + strand, within Shew_0611at 692.594 kb on + strand, within Shew_0611at 692.594 kb on + strand, within Shew_0611at 692.594 kb on + strand, within Shew_0611at 692.594 kb on + strand, within Shew_0611at 692.594 kb on + strand, within Shew_0611at 692.594 kb on + strand, within Shew_0611at 692.594 kb on + strand, within Shew_0611at 692.594 kb on + strand, within Shew_0611at 692.594 kb on + strand, within Shew_0611at 692.594 kb on + strand, within Shew_0611at 692.594 kb on + strand, within Shew_0611at 692.594 kb on + strand, within Shew_0611at 692.595 kb on + strand, within Shew_0611at 692.597 kb on - strand, within Shew_0611at 692.597 kb on - strand, within Shew_0611at 692.602 kb on - strand, within Shew_0611at 692.602 kb on - strand, within Shew_0611at 692.602 kb on - strand, within Shew_0611at 692.602 kb on - strand, within Shew_0611at 692.602 kb on - strand, within Shew_0611at 692.602 kb on - strand, within Shew_0611at 692.602 kb on - strand, within Shew_0611at 692.602 kb on - strand, within Shew_0611at 692.602 kb on - strand, within Shew_0611at 692.602 kb on - strand, within Shew_0611at 692.602 kb on - strand, within Shew_0611at 692.602 kb on - strand, within Shew_0611at 692.602 kb on - strand, within Shew_0611at 692.649 kb on + strand, within Shew_0611at 692.656 kb on + strand, within Shew_0611at 692.656 kb on + strand, within Shew_0611at 692.656 kb on + strand, within Shew_0611at 692.656 kb on + strand, within Shew_0611at 692.656 kb on + strand, within Shew_0611at 692.656 kb on + strand, within Shew_0611at 692.664 kb on - strand, within Shew_0611at 692.664 kb on - strand, within Shew_0611at 692.664 kb on - strand, within Shew_0611at 692.664 kb on - strand, within Shew_0611at 692.664 kb on - strand, within Shew_0611at 692.669 kb on - strand, within Shew_0611at 692.669 kb on - strand, within Shew_0611at 692.705 kb on + strand, within Shew_0611

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml
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688,869 + -0.1
689,090 + +0.0
689,198 + Shew_0609 0.28 -0.6
689,392 - Shew_0609 0.60 -0.5
689,549 + Shew_0609 0.86 -0.5
689,557 - Shew_0609 0.88 +0.1
689,679 + -0.6
689,687 - -0.0
689,808 - +0.5
690,174 + Shew_0610 0.18 +1.5
690,496 + Shew_0610 0.35 -0.7
690,496 + Shew_0610 0.35 -0.4
690,504 - Shew_0610 0.36 -0.4
690,612 - Shew_0610 0.41 +1.0
690,723 - Shew_0610 0.47 +0.6
690,735 - Shew_0610 0.48 +2.9
690,784 + Shew_0610 0.51 +0.2
690,792 - Shew_0610 0.51 +0.2
690,808 + Shew_0610 0.52 +0.3
690,818 + Shew_0610 0.52 -0.1
690,818 + Shew_0610 0.52 -0.1
690,945 - Shew_0610 0.59 -0.2
690,985 + Shew_0610 0.61 -0.0
690,985 + Shew_0610 0.61 +0.1
691,025 - Shew_0610 0.63 -0.1
691,193 - Shew_0610 0.72 +0.3
691,366 + Shew_0610 0.81 -0.5
691,675 - +0.3
691,818 - +0.1
691,818 - -2.3
691,918 + -0.4
691,961 + +0.0
692,063 + -0.5
692,084 - -1.8
692,085 - +0.9
692,104 + -0.0
692,202 - Shew_0611 0.13 +0.7
692,208 + Shew_0611 0.14 +0.8
692,208 + Shew_0611 0.14 +0.1
692,208 + Shew_0611 0.14 -0.3
692,208 + Shew_0611 0.14 -0.4
692,216 - Shew_0611 0.15 +0.8
692,216 - Shew_0611 0.15 -0.9
692,216 - Shew_0611 0.15 +0.1
692,216 - Shew_0611 0.15 +0.1
692,247 - Shew_0611 0.20 +0.2
692,270 + Shew_0611 0.23 -0.3
692,272 + Shew_0611 0.23 +0.2
692,280 - Shew_0611 0.24 +0.2
692,283 + Shew_0611 0.25 -0.4
692,296 + Shew_0611 0.27 +1.4
692,354 + Shew_0611 0.35 -0.4
692,362 - Shew_0611 0.36 -0.5
692,362 - Shew_0611 0.36 -0.2
692,386 + Shew_0611 0.39 +0.2
692,396 + Shew_0611 0.41 -0.1
692,396 + Shew_0611 0.41 -1.0
692,399 - Shew_0611 0.41 -1.2
692,417 + Shew_0611 0.44 -0.2
692,417 + Shew_0611 0.44 +0.4
692,417 + Shew_0611 0.44 -0.0
692,417 + Shew_0611 0.44 -0.3
692,424 + Shew_0611 0.45 -0.3
692,425 - Shew_0611 0.45 -0.6
692,425 - Shew_0611 0.45 +0.2
692,425 - Shew_0611 0.45 +0.1
692,425 - Shew_0611 0.45 +0.6
692,429 + Shew_0611 0.45 +1.8
692,429 + Shew_0611 0.45 -0.1
692,429 + Shew_0611 0.45 -0.5
692,429 + Shew_0611 0.45 -0.2
692,429 + Shew_0611 0.45 -0.1
692,429 + Shew_0611 0.45 -0.0
692,429 + Shew_0611 0.45 -0.4
692,437 - Shew_0611 0.47 +0.0
692,437 - Shew_0611 0.47 +1.5
692,437 - Shew_0611 0.47 +0.2
692,453 + Shew_0611 0.49 -0.1
692,465 + Shew_0611 0.51 -2.3
692,465 + Shew_0611 0.51 -0.4
692,465 + Shew_0611 0.51 -0.1
692,465 + Shew_0611 0.51 -0.0
692,465 + Shew_0611 0.51 -0.0
692,465 + Shew_0611 0.51 +0.1
692,466 - Shew_0611 0.51 +0.1
692,472 + Shew_0611 0.52 -0.7
692,472 + Shew_0611 0.52 +0.0
692,473 - Shew_0611 0.52 -1.2
692,473 - Shew_0611 0.52 -0.1
692,473 - Shew_0611 0.52 +1.0
692,473 - Shew_0611 0.52 +0.0
692,473 - Shew_0611 0.52 +0.4
692,480 - Shew_0611 0.53 -0.2
692,480 - Shew_0611 0.53 +0.8
692,480 - Shew_0611 0.53 -2.1
692,531 - Shew_0611 0.60 -0.4
692,540 - Shew_0611 0.61 -0.2
692,545 - Shew_0611 0.62 -0.9
692,581 + Shew_0611 0.67 +0.1
692,587 - Shew_0611 0.68 +0.4
692,589 + Shew_0611 0.68 +0.7
692,589 + Shew_0611 0.68 +0.6
692,589 + Shew_0611 0.68 -0.3
692,589 + Shew_0611 0.68 +0.2
692,594 + Shew_0611 0.69 -0.2
692,594 + Shew_0611 0.69 +0.3
692,594 + Shew_0611 0.69 -0.1
692,594 + Shew_0611 0.69 +0.7
692,594 + Shew_0611 0.69 -0.0
692,594 + Shew_0611 0.69 +0.5
692,594 + Shew_0611 0.69 +0.1
692,594 + Shew_0611 0.69 -0.3
692,594 + Shew_0611 0.69 -0.2
692,594 + Shew_0611 0.69 +0.5
692,594 + Shew_0611 0.69 +0.4
692,594 + Shew_0611 0.69 -0.0
692,594 + Shew_0611 0.69 -0.1
692,595 + Shew_0611 0.69 -0.1
692,597 - Shew_0611 0.69 +0.1
692,597 - Shew_0611 0.69 -0.0
692,602 - Shew_0611 0.70 -2.6
692,602 - Shew_0611 0.70 +0.1
692,602 - Shew_0611 0.70 +0.0
692,602 - Shew_0611 0.70 -1.0
692,602 - Shew_0611 0.70 +1.1
692,602 - Shew_0611 0.70 +0.1
692,602 - Shew_0611 0.70 +0.2
692,602 - Shew_0611 0.70 -0.5
692,602 - Shew_0611 0.70 -1.2
692,602 - Shew_0611 0.70 -0.1
692,602 - Shew_0611 0.70 -0.1
692,602 - Shew_0611 0.70 -0.3
692,602 - Shew_0611 0.70 -0.7
692,649 + Shew_0611 0.77 -0.3
692,656 + Shew_0611 0.78 +0.2
692,656 + Shew_0611 0.78 +0.0
692,656 + Shew_0611 0.78 +0.5
692,656 + Shew_0611 0.78 +0.1
692,656 + Shew_0611 0.78 -0.3
692,656 + Shew_0611 0.78 +0.3
692,664 - Shew_0611 0.79 -0.7
692,664 - Shew_0611 0.79 -0.2
692,664 - Shew_0611 0.79 -0.4
692,664 - Shew_0611 0.79 +0.2
692,664 - Shew_0611 0.79 +1.2
692,669 - Shew_0611 0.79 -0.1
692,669 - Shew_0611 0.79 +0.7
692,705 + Shew_0611 0.84 -0.3

Or see this region's nucleotide sequence