Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0589 and Shew_0590 are separated by 134 nucleotides Shew_0590 and Shew_0591 are separated by 150 nucleotides Shew_0591 and Shew_0592 are separated by 56 nucleotides Shew_0592 and Shew_0593 are separated by 67 nucleotides
Shew_0589: Shew_0589 - alpha/beta hydrolase fold (RefSeq), at 666,048 to 667,031
_0589
Shew_0590: Shew_0590 - hypothetical protein (RefSeq), at 667,166 to 667,672
_0590
Shew_0591: Shew_0591 - glucose-methanol-choline oxidoreductase (RefSeq), at 667,823 to 669,412
_0591
Shew_0592: Shew_0592 - hypothetical protein (RefSeq), at 669,469 to 669,918
_0592
Shew_0593: Shew_0593 - ABC transporter-related protein (RefSeq), at 669,986 to 671,896
_0593
Position (kb) 667
668
669
670 Strain fitness (log2 ratio) -2
-1
0
1 at 666.917 kb on + strand, within Shew_0589 at 666.946 kb on - strand at 667.371 kb on + strand, within Shew_0590 at 667.568 kb on - strand, within Shew_0590 at 667.568 kb on - strand, within Shew_0590 at 667.722 kb on + strand at 667.784 kb on + strand at 667.792 kb on - strand at 668.009 kb on - strand, within Shew_0591 at 668.440 kb on + strand, within Shew_0591 at 668.500 kb on + strand, within Shew_0591 at 668.768 kb on - strand, within Shew_0591 at 668.808 kb on + strand, within Shew_0591 at 668.887 kb on + strand, within Shew_0591 at 669.071 kb on + strand, within Shew_0591 at 669.247 kb on - strand, within Shew_0591 at 669.341 kb on - strand at 669.525 kb on + strand, within Shew_0592 at 669.596 kb on - strand, within Shew_0592 at 669.658 kb on - strand, within Shew_0592 at 669.933 kb on - strand at 669.953 kb on + strand at 669.966 kb on - strand at 670.058 kb on - strand at 670.069 kb on + strand at 670.092 kb on + strand at 670.125 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 666,917 + Shew_0589 0.88 -0.0 666,946 - -0.1 667,371 + Shew_0590 0.40 +0.1 667,568 - Shew_0590 0.79 +0.2 667,568 - Shew_0590 0.79 -0.2 667,722 + -0.3 667,784 + +0.2 667,792 - -0.5 668,009 - Shew_0591 0.12 +0.1 668,440 + Shew_0591 0.39 -1.2 668,500 + Shew_0591 0.43 -0.5 668,768 - Shew_0591 0.59 -2.0 668,808 + Shew_0591 0.62 -0.6 668,887 + Shew_0591 0.67 +0.1 669,071 + Shew_0591 0.78 -0.1 669,247 - Shew_0591 0.90 +0.2 669,341 - -0.1 669,525 + Shew_0592 0.12 +0.2 669,596 - Shew_0592 0.28 -0.5 669,658 - Shew_0592 0.42 -0.5 669,933 - +0.5 669,953 + -0.2 669,966 - -0.1 670,058 - -0.7 670,069 + -0.1 670,092 + -0.7 670,125 + -1.0
Or see this region's nucleotide sequence