Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0576 and Shew_0577 are separated by 110 nucleotides Shew_0577 and argD are separated by 614 nucleotides
Shew_0576: Shew_0576 - peptidase S9 prolyl oligopeptidase (RefSeq), at 650,838 to 653,324
_0576
Shew_0577: Shew_0577 - putative signal transduction protein (RefSeq), at 653,435 to 654,580
_0577
Shew_0578: argD - bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq), at 655,195 to 656,412
argD
Position (kb) 653
654
655 Strain fitness (log2 ratio) -2
-1
0
1 at 652.444 kb on + strand, within Shew_0576 at 652.444 kb on + strand, within Shew_0576 at 653.013 kb on + strand, within Shew_0576 at 653.112 kb on + strand at 653.137 kb on + strand at 653.392 kb on + strand at 654.024 kb on - strand, within Shew_0577 at 654.027 kb on + strand, within Shew_0577 at 654.035 kb on - strand, within Shew_0577 at 654.035 kb on - strand, within Shew_0577 at 654.118 kb on - strand, within Shew_0577 at 654.162 kb on - strand, within Shew_0577 at 654.308 kb on - strand, within Shew_0577 at 654.488 kb on - strand at 654.556 kb on - strand at 654.635 kb on - strand at 654.881 kb on - strand at 655.313 kb on - strand at 655.383 kb on - strand, within argD
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 652,444 + Shew_0576 0.65 +0.0 652,444 + Shew_0576 0.65 +0.2 653,013 + Shew_0576 0.87 +0.0 653,112 + +0.1 653,137 + +0.2 653,392 + +0.3 654,024 - Shew_0577 0.51 -2.3 654,027 + Shew_0577 0.52 -0.7 654,035 - Shew_0577 0.52 -0.3 654,035 - Shew_0577 0.52 -0.8 654,118 - Shew_0577 0.60 +0.6 654,162 - Shew_0577 0.63 -0.3 654,308 - Shew_0577 0.76 +0.1 654,488 - -0.9 654,556 - -0.3 654,635 - +1.1 654,881 - -0.5 655,313 - +1.2 655,383 - argD Shew_0578 0.15 -1.4
Or see this region's nucleotide sequence