Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0476 and Shew_0477 are separated by 31 nucleotides Shew_0477 and Shew_0478 are separated by 619 nucleotides Shew_0478 and Shew_0479 are separated by 2 nucleotides
Shew_0476: Shew_0476 - hypothetical protein (RefSeq), at 533,870 to 534,667
_0476
Shew_0477: Shew_0477 - hypothetical protein (RefSeq), at 534,699 to 535,280
_0477
Shew_0478: Shew_0478 - XRE family transcriptional regulator (RefSeq), at 535,900 to 536,136
_0478
Shew_0479: Shew_0479 - HipA domain-containing protein (RefSeq), at 536,139 to 537,440
_0479
Position (kb) 534
535
536 Strain fitness (log2 ratio) -2
-1
0
1
2 at 533.699 kb on - strand at 533.768 kb on + strand at 533.784 kb on - strand at 533.892 kb on + strand at 533.900 kb on - strand at 533.900 kb on - strand at 533.902 kb on + strand at 533.914 kb on + strand at 533.914 kb on + strand at 533.914 kb on + strand at 533.914 kb on + strand at 533.922 kb on - strand at 533.940 kb on + strand at 533.947 kb on + strand at 533.947 kb on + strand at 533.947 kb on + strand at 533.947 kb on + strand at 533.947 kb on + strand at 533.947 kb on + strand at 533.947 kb on + strand at 533.947 kb on + strand at 533.947 kb on + strand at 533.955 kb on - strand, within Shew_0476 at 533.955 kb on - strand, within Shew_0476 at 533.955 kb on - strand, within Shew_0476 at 533.955 kb on - strand, within Shew_0476 at 533.955 kb on - strand, within Shew_0476 at 534.011 kb on - strand, within Shew_0476 at 534.046 kb on - strand, within Shew_0476 at 534.122 kb on - strand, within Shew_0476 at 534.129 kb on - strand, within Shew_0476 at 534.203 kb on + strand, within Shew_0476 at 534.244 kb on + strand, within Shew_0476 at 534.298 kb on - strand, within Shew_0476 at 534.316 kb on + strand, within Shew_0476 at 534.377 kb on - strand, within Shew_0476 at 534.473 kb on + strand, within Shew_0476 at 534.473 kb on + strand, within Shew_0476 at 534.473 kb on + strand, within Shew_0476 at 534.481 kb on - strand, within Shew_0476 at 534.521 kb on + strand, within Shew_0476 at 534.553 kb on - strand, within Shew_0476 at 534.635 kb on + strand at 534.753 kb on - strand at 534.758 kb on - strand, within Shew_0477 at 534.891 kb on - strand, within Shew_0477 at 534.903 kb on - strand, within Shew_0477 at 534.903 kb on - strand, within Shew_0477 at 534.924 kb on + strand, within Shew_0477 at 535.129 kb on + strand, within Shew_0477 at 535.129 kb on + strand, within Shew_0477 at 535.241 kb on + strand at 535.301 kb on + strand at 535.524 kb on + strand at 535.639 kb on - strand at 535.704 kb on + strand at 535.878 kb on - strand at 536.049 kb on - strand, within Shew_0478 at 536.130 kb on + strand at 536.186 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 533,699 - -0.0 533,768 + +0.2 533,784 - -0.5 533,892 + -0.1 533,900 - -0.2 533,900 - +0.6 533,902 + +0.8 533,914 + +0.9 533,914 + +0.1 533,914 + -0.2 533,914 + -0.4 533,922 - +0.4 533,940 + +0.2 533,947 + +1.0 533,947 + +1.3 533,947 + +0.2 533,947 + +0.3 533,947 + -0.4 533,947 + -0.1 533,947 + -2.1 533,947 + -1.6 533,947 + +0.1 533,955 - Shew_0476 0.11 +0.1 533,955 - Shew_0476 0.11 +0.4 533,955 - Shew_0476 0.11 -0.0 533,955 - Shew_0476 0.11 +1.8 533,955 - Shew_0476 0.11 +1.4 534,011 - Shew_0476 0.18 +0.2 534,046 - Shew_0476 0.22 +0.1 534,122 - Shew_0476 0.32 -0.0 534,129 - Shew_0476 0.32 +0.2 534,203 + Shew_0476 0.42 -0.1 534,244 + Shew_0476 0.47 -0.8 534,298 - Shew_0476 0.54 -0.6 534,316 + Shew_0476 0.56 -0.1 534,377 - Shew_0476 0.64 -0.7 534,473 + Shew_0476 0.76 +1.3 534,473 + Shew_0476 0.76 +0.6 534,473 + Shew_0476 0.76 +0.1 534,481 - Shew_0476 0.77 +0.2 534,521 + Shew_0476 0.82 +0.4 534,553 - Shew_0476 0.86 -0.2 534,635 + -0.0 534,753 - +0.4 534,758 - Shew_0477 0.10 +0.5 534,891 - Shew_0477 0.33 +0.4 534,903 - Shew_0477 0.35 -0.9 534,903 - Shew_0477 0.35 -0.3 534,924 + Shew_0477 0.39 -1.3 535,129 + Shew_0477 0.74 -1.9 535,129 + Shew_0477 0.74 +0.0 535,241 + -0.1 535,301 + -0.2 535,524 + +0.1 535,639 - -0.7 535,704 + +0.1 535,878 - +0.2 536,049 - Shew_0478 0.63 +1.9 536,130 + +0.2 536,186 + +0.2
Or see this region's nucleotide sequence