Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0244 and Shew_0245 are separated by 9 nucleotides Shew_0245 and Shew_0246 are separated by 153 nucleotides
Shew_0244: Shew_0244 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 261,778 to 262,473
_0244
Shew_0245: Shew_0245 - molydopterin dinucleotide-binding region (RefSeq), at 262,483 to 265,521
_0245
Shew_0246: Shew_0246 - hypothetical protein (RefSeq), at 265,675 to 266,292
_0246
Position (kb) 262
263
264
265
266 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 261.494 kb on + strand at 261.502 kb on - strand at 261.504 kb on - strand at 261.588 kb on + strand at 261.670 kb on + strand at 261.670 kb on + strand at 261.670 kb on + strand at 261.670 kb on + strand at 261.774 kb on + strand at 261.780 kb on - strand at 261.786 kb on - strand at 261.786 kb on - strand at 261.823 kb on - strand at 261.825 kb on + strand at 261.825 kb on + strand at 261.825 kb on + strand at 261.825 kb on + strand at 261.828 kb on - strand at 261.828 kb on - strand at 261.833 kb on - strand at 261.833 kb on - strand at 261.842 kb on - strand at 261.850 kb on - strand, within Shew_0244 at 261.863 kb on + strand, within Shew_0244 at 261.871 kb on - strand, within Shew_0244 at 261.878 kb on + strand, within Shew_0244 at 261.880 kb on + strand, within Shew_0244 at 261.888 kb on + strand, within Shew_0244 at 261.893 kb on + strand, within Shew_0244 at 261.894 kb on - strand, within Shew_0244 at 261.992 kb on + strand, within Shew_0244 at 262.006 kb on - strand, within Shew_0244 at 262.037 kb on + strand, within Shew_0244 at 262.079 kb on - strand, within Shew_0244 at 262.084 kb on - strand, within Shew_0244 at 262.084 kb on - strand, within Shew_0244 at 262.098 kb on - strand, within Shew_0244 at 262.112 kb on + strand, within Shew_0244 at 262.247 kb on + strand, within Shew_0244 at 262.255 kb on - strand, within Shew_0244 at 262.356 kb on + strand, within Shew_0244 at 262.364 kb on - strand, within Shew_0244 at 262.429 kb on + strand at 262.723 kb on - strand at 262.951 kb on + strand, within Shew_0245 at 262.993 kb on - strand, within Shew_0245 at 263.142 kb on - strand, within Shew_0245 at 263.144 kb on - strand, within Shew_0245 at 263.190 kb on + strand, within Shew_0245 at 263.201 kb on + strand, within Shew_0245 at 263.259 kb on - strand, within Shew_0245 at 263.336 kb on - strand, within Shew_0245 at 263.362 kb on + strand, within Shew_0245 at 263.396 kb on + strand, within Shew_0245 at 263.506 kb on + strand, within Shew_0245 at 263.513 kb on + strand, within Shew_0245 at 263.521 kb on - strand, within Shew_0245 at 263.521 kb on - strand, within Shew_0245 at 263.731 kb on + strand, within Shew_0245 at 263.875 kb on - strand, within Shew_0245 at 264.012 kb on - strand, within Shew_0245 at 264.138 kb on + strand, within Shew_0245 at 264.221 kb on - strand, within Shew_0245 at 264.330 kb on - strand, within Shew_0245 at 264.376 kb on - strand, within Shew_0245 at 264.521 kb on + strand, within Shew_0245 at 264.558 kb on - strand, within Shew_0245 at 264.821 kb on + strand, within Shew_0245 at 264.829 kb on - strand, within Shew_0245 at 264.852 kb on + strand, within Shew_0245 at 264.885 kb on - strand, within Shew_0245 at 264.938 kb on - strand, within Shew_0245 at 264.938 kb on - strand, within Shew_0245 at 264.938 kb on - strand, within Shew_0245 at 265.248 kb on + strand at 265.273 kb on + strand at 265.592 kb on - strand at 265.755 kb on - strand, within Shew_0246 at 265.988 kb on + strand, within Shew_0246
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 261,494 + +0.0 261,502 - +0.4 261,504 - -0.6 261,588 + +0.4 261,670 + +0.6 261,670 + -0.2 261,670 + -0.1 261,670 + +0.2 261,774 + -0.0 261,780 - +0.2 261,786 - -0.1 261,786 - +0.2 261,823 - +0.5 261,825 + -0.1 261,825 + +0.3 261,825 + +0.0 261,825 + +0.3 261,828 - -1.2 261,828 - -0.4 261,833 - +0.1 261,833 - +0.2 261,842 - +0.0 261,850 - Shew_0244 0.10 -0.1 261,863 + Shew_0244 0.12 +0.1 261,871 - Shew_0244 0.13 -0.0 261,878 + Shew_0244 0.14 +0.4 261,880 + Shew_0244 0.15 +0.4 261,888 + Shew_0244 0.16 +0.3 261,893 + Shew_0244 0.17 +0.1 261,894 - Shew_0244 0.17 +0.2 261,992 + Shew_0244 0.31 +0.1 262,006 - Shew_0244 0.33 -0.4 262,037 + Shew_0244 0.37 -0.6 262,079 - Shew_0244 0.43 +0.3 262,084 - Shew_0244 0.44 +0.2 262,084 - Shew_0244 0.44 -0.6 262,098 - Shew_0244 0.46 -0.1 262,112 + Shew_0244 0.48 -0.4 262,247 + Shew_0244 0.67 +0.8 262,255 - Shew_0244 0.69 -0.0 262,356 + Shew_0244 0.83 -0.2 262,364 - Shew_0244 0.84 +0.8 262,429 + +0.2 262,723 - +0.7 262,951 + Shew_0245 0.15 -0.1 262,993 - Shew_0245 0.17 +0.4 263,142 - Shew_0245 0.22 +0.1 263,144 - Shew_0245 0.22 -2.7 263,190 + Shew_0245 0.23 +0.1 263,201 + Shew_0245 0.24 +0.0 263,259 - Shew_0245 0.26 +0.2 263,336 - Shew_0245 0.28 -0.1 263,362 + Shew_0245 0.29 -0.7 263,396 + Shew_0245 0.30 -0.0 263,506 + Shew_0245 0.34 -0.6 263,513 + Shew_0245 0.34 -2.8 263,521 - Shew_0245 0.34 -2.0 263,521 - Shew_0245 0.34 -0.2 263,731 + Shew_0245 0.41 -0.4 263,875 - Shew_0245 0.46 -0.3 264,012 - Shew_0245 0.50 -0.2 264,138 + Shew_0245 0.54 +0.1 264,221 - Shew_0245 0.57 +0.1 264,330 - Shew_0245 0.61 +0.8 264,376 - Shew_0245 0.62 -1.9 264,521 + Shew_0245 0.67 +0.2 264,558 - Shew_0245 0.68 +0.2 264,821 + Shew_0245 0.77 +0.4 264,829 - Shew_0245 0.77 +0.3 264,852 + Shew_0245 0.78 -0.3 264,885 - Shew_0245 0.79 -0.1 264,938 - Shew_0245 0.81 -0.3 264,938 - Shew_0245 0.81 -0.4 264,938 - Shew_0245 0.81 -0.8 265,248 + +0.1 265,273 + -2.7 265,592 - -0.4 265,755 - Shew_0246 0.13 -0.1 265,988 + Shew_0246 0.51 +0.4
Or see this region's nucleotide sequence