Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0134 and Shew_0135 overlap by 1 nucleotides Shew_0135 and Shew_0136 are separated by 162 nucleotides
Shew_0134: Shew_0134 - tRNA 2-selenouridine synthase (RefSeq), at 143,555 to 144,673
_0134
Shew_0135: Shew_0135 - selenide, water dikinase (RefSeq), at 144,673 to 145,716
_0135
Shew_0136: Shew_0136 - stearoyl-CoA 9-desaturase (RefSeq), at 145,879 to 146,985
_0136
Position (kb) 144
145
146 Strain fitness (log2 ratio) -1
0
1 at 143.704 kb on + strand, within Shew_0134 at 143.804 kb on - strand, within Shew_0134 at 143.973 kb on + strand, within Shew_0134 at 143.981 kb on - strand, within Shew_0134 at 143.981 kb on - strand, within Shew_0134 at 143.981 kb on - strand, within Shew_0134 at 143.981 kb on - strand, within Shew_0134 at 143.986 kb on - strand, within Shew_0134 at 144.048 kb on + strand, within Shew_0134 at 144.053 kb on + strand, within Shew_0134 at 144.255 kb on - strand, within Shew_0134 at 144.265 kb on + strand, within Shew_0134 at 144.619 kb on + strand at 144.627 kb on - strand at 144.684 kb on - strand at 144.963 kb on + strand, within Shew_0135 at 144.971 kb on - strand, within Shew_0135 at 144.971 kb on - strand, within Shew_0135 at 145.396 kb on + strand, within Shew_0135 at 145.520 kb on + strand, within Shew_0135 at 145.644 kb on - strand at 145.703 kb on - strand at 145.746 kb on + strand at 145.770 kb on - strand at 145.770 kb on - strand at 145.770 kb on - strand at 145.991 kb on + strand, within Shew_0136 at 146.102 kb on + strand, within Shew_0136 at 146.103 kb on + strand, within Shew_0136 at 146.168 kb on + strand, within Shew_0136 at 146.187 kb on + strand, within Shew_0136 at 146.359 kb on - strand, within Shew_0136 at 146.374 kb on - strand, within Shew_0136 at 146.374 kb on - strand, within Shew_0136 at 146.407 kb on - strand, within Shew_0136 at 146.449 kb on + strand, within Shew_0136 at 146.498 kb on - strand, within Shew_0136
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 143,704 + Shew_0134 0.13 +0.2 143,804 - Shew_0134 0.22 +0.3 143,973 + Shew_0134 0.37 +0.7 143,981 - Shew_0134 0.38 +0.3 143,981 - Shew_0134 0.38 +0.4 143,981 - Shew_0134 0.38 -0.0 143,981 - Shew_0134 0.38 +0.9 143,986 - Shew_0134 0.39 +0.5 144,048 + Shew_0134 0.44 -0.2 144,053 + Shew_0134 0.45 -0.0 144,255 - Shew_0134 0.63 -1.4 144,265 + Shew_0134 0.63 -0.2 144,619 + +0.3 144,627 - +0.1 144,684 - +0.3 144,963 + Shew_0135 0.28 -0.1 144,971 - Shew_0135 0.29 -1.0 144,971 - Shew_0135 0.29 -0.2 145,396 + Shew_0135 0.69 -0.2 145,520 + Shew_0135 0.81 -0.1 145,644 - +0.6 145,703 - +0.3 145,746 + +0.3 145,770 - +0.4 145,770 - -0.6 145,770 - -0.4 145,991 + Shew_0136 0.10 -0.8 146,102 + Shew_0136 0.20 +0.5 146,103 + Shew_0136 0.20 -0.5 146,168 + Shew_0136 0.26 +0.8 146,187 + Shew_0136 0.28 +0.7 146,359 - Shew_0136 0.43 +0.3 146,374 - Shew_0136 0.45 +1.2 146,374 - Shew_0136 0.45 +0.3 146,407 - Shew_0136 0.48 +0.1 146,449 + Shew_0136 0.51 +0.6 146,498 - Shew_0136 0.56 +0.7
Or see this region's nucleotide sequence