Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS30215

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS00860 and PFLU_RS30215 are separated by 2 nucleotidesPFLU_RS30215 and PFLU_RS00865 are separated by 973 nucleotides PFLU_RS00860: PFLU_RS00860 - ATP-binding protein, at 190,401 to 192,233 _RS00860 PFLU_RS30215: PFLU_RS30215 - KTSC domain-containing protein, at 192,236 to 192,445 _RS30215 PFLU_RS00865: PFLU_RS00865 - hypothetical protein, at 193,419 to 195,041 _RS00865 Position (kb) 192 193Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 191.237 kb on + strand, within PFLU_RS00860at 191.333 kb on - strand, within PFLU_RS00860at 191.374 kb on - strand, within PFLU_RS00860at 191.374 kb on - strand, within PFLU_RS00860at 191.429 kb on + strand, within PFLU_RS00860at 191.431 kb on + strand, within PFLU_RS00860at 191.432 kb on - strand, within PFLU_RS00860at 191.436 kb on - strand, within PFLU_RS00860at 191.478 kb on + strand, within PFLU_RS00860at 191.479 kb on - strand, within PFLU_RS00860at 191.492 kb on - strand, within PFLU_RS00860at 191.591 kb on - strand, within PFLU_RS00860at 191.591 kb on - strand, within PFLU_RS00860at 191.651 kb on + strand, within PFLU_RS00860at 191.717 kb on - strand, within PFLU_RS00860at 191.783 kb on - strand, within PFLU_RS00860at 191.789 kb on + strand, within PFLU_RS00860at 191.789 kb on + strand, within PFLU_RS00860at 191.790 kb on - strand, within PFLU_RS00860at 191.812 kb on - strand, within PFLU_RS00860at 192.001 kb on + strand, within PFLU_RS00860at 192.002 kb on - strand, within PFLU_RS00860at 192.002 kb on - strand, within PFLU_RS00860at 192.002 kb on - strand, within PFLU_RS00860at 192.002 kb on - strand, within PFLU_RS00860at 192.002 kb on - strand, within PFLU_RS00860at 192.067 kb on + strandat 192.067 kb on + strandat 192.068 kb on - strandat 192.086 kb on + strandat 192.086 kb on + strandat 192.086 kb on + strandat 192.086 kb on + strandat 192.086 kb on + strandat 192.086 kb on + strandat 192.086 kb on + strandat 192.087 kb on - strandat 192.087 kb on - strandat 192.087 kb on - strandat 192.087 kb on - strandat 192.087 kb on - strandat 192.087 kb on - strandat 192.087 kb on - strandat 192.129 kb on + strandat 192.130 kb on - strandat 192.130 kb on - strandat 192.130 kb on - strandat 192.130 kb on - strandat 192.167 kb on + strandat 192.167 kb on + strandat 192.167 kb on + strandat 192.167 kb on + strandat 192.167 kb on + strandat 192.167 kb on + strandat 192.167 kb on + strandat 192.167 kb on + strandat 192.167 kb on + strandat 192.167 kb on + strandat 192.167 kb on + strandat 192.167 kb on + strandat 192.167 kb on + strandat 192.167 kb on + strandat 192.168 kb on - strandat 192.168 kb on - strandat 192.168 kb on - strandat 192.168 kb on - strandat 192.168 kb on - strandat 192.168 kb on - strandat 192.168 kb on - strandat 192.168 kb on - strandat 192.168 kb on - strandat 192.193 kb on + strandat 192.194 kb on - strandat 192.194 kb on - strandat 192.265 kb on + strand, within PFLU_RS30215at 192.265 kb on + strand, within PFLU_RS30215at 192.265 kb on + strand, within PFLU_RS30215at 192.265 kb on + strand, within PFLU_RS30215at 192.266 kb on - strand, within PFLU_RS30215at 192.266 kb on - strand, within PFLU_RS30215at 192.266 kb on - strand, within PFLU_RS30215at 192.266 kb on - strand, within PFLU_RS30215at 192.266 kb on - strand, within PFLU_RS30215at 192.266 kb on - strand, within PFLU_RS30215at 192.266 kb on - strand, within PFLU_RS30215at 192.270 kb on + strand, within PFLU_RS30215at 192.270 kb on + strand, within PFLU_RS30215at 192.270 kb on + strand, within PFLU_RS30215at 192.270 kb on + strand, within PFLU_RS30215at 192.270 kb on + strand, within PFLU_RS30215at 192.270 kb on + strand, within PFLU_RS30215at 192.271 kb on - strand, within PFLU_RS30215at 192.271 kb on - strand, within PFLU_RS30215at 192.271 kb on - strand, within PFLU_RS30215at 192.271 kb on - strand, within PFLU_RS30215at 192.333 kb on - strand, within PFLU_RS30215at 192.339 kb on - strand, within PFLU_RS30215at 192.341 kb on + strand, within PFLU_RS30215at 192.341 kb on + strand, within PFLU_RS30215at 192.341 kb on + strand, within PFLU_RS30215at 192.341 kb on + strand, within PFLU_RS30215at 192.342 kb on - strand, within PFLU_RS30215at 192.343 kb on + strand, within PFLU_RS30215at 192.344 kb on - strand, within PFLU_RS30215at 192.362 kb on + strand, within PFLU_RS30215at 192.389 kb on - strand, within PFLU_RS30215at 192.409 kb on - strand, within PFLU_RS30215at 192.411 kb on - strand, within PFLU_RS30215at 192.411 kb on - strand, within PFLU_RS30215at 192.487 kb on + strandat 192.488 kb on - strandat 192.510 kb on - strandat 192.530 kb on + strandat 192.531 kb on - strandat 192.531 kb on - strandat 192.531 kb on - strandat 192.547 kb on - strandat 192.565 kb on - strandat 192.645 kb on + strandat 192.659 kb on + strandat 192.660 kb on - strandat 192.663 kb on + strandat 192.663 kb on + strandat 192.742 kb on + strandat 192.908 kb on - strandat 192.911 kb on + strandat 192.917 kb on + strandat 192.918 kb on - strandat 192.985 kb on + strandat 193.032 kb on - strandat 193.033 kb on + strandat 193.033 kb on + strandat 193.033 kb on + strandat 193.058 kb on + strandat 193.209 kb on - strandat 193.216 kb on + strandat 193.247 kb on + strandat 193.247 kb on + strandat 193.248 kb on - strandat 193.249 kb on + strandat 193.249 kb on + strandat 193.325 kb on - strandat 193.374 kb on + strandat 193.374 kb on + strandat 193.375 kb on - strandat 193.401 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
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191,237 + PFLU_RS00860 0.46 -0.5
191,333 - PFLU_RS00860 0.51 -1.1
191,374 - PFLU_RS00860 0.53 +1.0
191,374 - PFLU_RS00860 0.53 -0.1
191,429 + PFLU_RS00860 0.56 -1.0
191,431 + PFLU_RS00860 0.56 -0.3
191,432 - PFLU_RS00860 0.56 -1.2
191,436 - PFLU_RS00860 0.56 +1.3
191,478 + PFLU_RS00860 0.59 +0.6
191,479 - PFLU_RS00860 0.59 +0.1
191,492 - PFLU_RS00860 0.60 -0.2
191,591 - PFLU_RS00860 0.65 -0.1
191,591 - PFLU_RS00860 0.65 -0.1
191,651 + PFLU_RS00860 0.68 -1.3
191,717 - PFLU_RS00860 0.72 -0.5
191,783 - PFLU_RS00860 0.75 -0.8
191,789 + PFLU_RS00860 0.76 -1.6
191,789 + PFLU_RS00860 0.76 -0.2
191,790 - PFLU_RS00860 0.76 -0.7
191,812 - PFLU_RS00860 0.77 +0.7
192,001 + PFLU_RS00860 0.87 -3.5
192,002 - PFLU_RS00860 0.87 +0.6
192,002 - PFLU_RS00860 0.87 -1.0
192,002 - PFLU_RS00860 0.87 -0.7
192,002 - PFLU_RS00860 0.87 -0.5
192,002 - PFLU_RS00860 0.87 +0.3
192,067 + +2.0
192,067 + -3.0
192,068 - +1.2
192,086 + -2.5
192,086 + -3.0
192,086 + -2.9
192,086 + -2.4
192,086 + -2.8
192,086 + -0.6
192,086 + -2.0
192,087 - -1.0
192,087 - +0.2
192,087 - -2.0
192,087 - -1.0
192,087 - +1.0
192,087 - -1.0
192,087 - +0.5
192,129 + -2.4
192,130 - -2.4
192,130 - +0.2
192,130 - -0.0
192,130 - +1.5
192,167 + -2.8
192,167 + -2.9
192,167 + +1.0
192,167 + -3.3
192,167 + -3.3
192,167 + -2.1
192,167 + -3.1
192,167 + -0.8
192,167 + -3.0
192,167 + -2.5
192,167 + -0.3
192,167 + -0.8
192,167 + -1.3
192,167 + +1.0
192,168 - +1.0
192,168 - -0.7
192,168 - +1.7
192,168 - +1.2
192,168 - -0.4
192,168 - +0.4
192,168 - +1.0
192,168 - +1.1
192,168 - -1.0
192,193 + -3.3
192,194 - +1.0
192,194 - -1.4
192,265 + PFLU_RS30215 0.14 -2.0
192,265 + PFLU_RS30215 0.14 -2.0
192,265 + PFLU_RS30215 0.14 -2.8
192,265 + PFLU_RS30215 0.14 -1.6
192,266 - PFLU_RS30215 0.14 -3.7
192,266 - PFLU_RS30215 0.14 -2.7
192,266 - PFLU_RS30215 0.14 -3.3
192,266 - PFLU_RS30215 0.14 -1.7
192,266 - PFLU_RS30215 0.14 -2.2
192,266 - PFLU_RS30215 0.14 -2.5
192,266 - PFLU_RS30215 0.14 -3.3
192,270 + PFLU_RS30215 0.16 -3.8
192,270 + PFLU_RS30215 0.16 -2.8
192,270 + PFLU_RS30215 0.16 -2.0
192,270 + PFLU_RS30215 0.16 -3.7
192,270 + PFLU_RS30215 0.16 -3.7
192,270 + PFLU_RS30215 0.16 -2.4
192,271 - PFLU_RS30215 0.17 -1.9
192,271 - PFLU_RS30215 0.17 -3.0
192,271 - PFLU_RS30215 0.17 -1.3
192,271 - PFLU_RS30215 0.17 -3.9
192,333 - PFLU_RS30215 0.46 -1.0
192,339 - PFLU_RS30215 0.49 -0.0
192,341 + PFLU_RS30215 0.50 -2.5
192,341 + PFLU_RS30215 0.50 -3.4
192,341 + PFLU_RS30215 0.50 -2.2
192,341 + PFLU_RS30215 0.50 -2.3
192,342 - PFLU_RS30215 0.50 -2.2
192,343 + PFLU_RS30215 0.51 -4.0
192,344 - PFLU_RS30215 0.51 -2.0
192,362 + PFLU_RS30215 0.60 -3.1
192,389 - PFLU_RS30215 0.73 -2.9
192,409 - PFLU_RS30215 0.82 -2.1
192,411 - PFLU_RS30215 0.83 -0.7
192,411 - PFLU_RS30215 0.83 -3.0
192,487 + -1.6
192,488 - +0.5
192,510 - +1.6
192,530 + -0.8
192,531 - +1.2
192,531 - -1.7
192,531 - -1.2
192,547 - +1.3
192,565 - -1.5
192,645 + -1.7
192,659 + -1.0
192,660 - -1.3
192,663 + -1.2
192,663 + +0.4
192,742 + -0.3
192,908 - +0.3
192,911 + +1.0
192,917 + -0.2
192,918 - -0.8
192,985 + -0.7
193,032 - +0.3
193,033 + -0.0
193,033 + -0.8
193,033 + -2.8
193,058 + -0.8
193,209 - -1.5
193,216 + +0.6
193,247 + +0.4
193,247 + -0.7
193,248 - -0.6
193,249 + -1.0
193,249 + +1.1
193,325 - -0.6
193,374 + -0.9
193,374 + +0.2
193,375 - +0.4
193,401 + +0.5

Or see this region's nucleotide sequence