Experiment: Minimal media pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26340 and AO353_26345 are separated by 47 nucleotides AO353_26345 and AO353_26350 are separated by 34 nucleotides AO353_26350 and AO353_26355 are separated by 671 nucleotides
AO353_26340: AO353_26340 - hypothetical protein, at 5,783,074 to 5,783,796
_26340
AO353_26345: AO353_26345 - hypothetical protein, at 5,783,844 to 5,784,101
_26345
AO353_26350: AO353_26350 - peptidase, at 5,784,136 to 5,784,363
_26350
AO353_26355: AO353_26355 - hypothetical protein, at 5,785,035 to 5,785,508
_26355
Position (kb) 5784
5785 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5783.794 kb on + strand at 5783.795 kb on - strand at 5783.795 kb on - strand at 5783.878 kb on + strand, within AO353_26345 at 5783.879 kb on - strand, within AO353_26345 at 5783.879 kb on - strand, within AO353_26345 at 5783.921 kb on + strand, within AO353_26345 at 5783.921 kb on + strand, within AO353_26345 at 5783.922 kb on - strand, within AO353_26345 at 5783.922 kb on - strand, within AO353_26345 at 5783.923 kb on + strand, within AO353_26345 at 5783.923 kb on + strand, within AO353_26345 at 5783.923 kb on + strand, within AO353_26345 at 5783.923 kb on + strand, within AO353_26345 at 5783.923 kb on + strand, within AO353_26345 at 5783.923 kb on + strand, within AO353_26345 at 5783.924 kb on - strand, within AO353_26345 at 5783.924 kb on - strand, within AO353_26345 at 5783.924 kb on - strand, within AO353_26345 at 5783.930 kb on - strand, within AO353_26345 at 5783.986 kb on + strand, within AO353_26345 at 5783.986 kb on + strand, within AO353_26345 at 5783.986 kb on + strand, within AO353_26345 at 5783.986 kb on + strand, within AO353_26345 at 5783.987 kb on - strand, within AO353_26345 at 5783.987 kb on - strand, within AO353_26345 at 5783.990 kb on - strand, within AO353_26345 at 5784.147 kb on + strand at 5784.185 kb on + strand, within AO353_26350 at 5784.185 kb on + strand, within AO353_26350 at 5784.185 kb on + strand, within AO353_26350 at 5784.185 kb on + strand, within AO353_26350 at 5784.185 kb on + strand, within AO353_26350 at 5784.186 kb on - strand, within AO353_26350 at 5784.186 kb on - strand, within AO353_26350 at 5784.186 kb on - strand, within AO353_26350 at 5784.186 kb on - strand, within AO353_26350 at 5784.186 kb on - strand, within AO353_26350 at 5784.186 kb on - strand, within AO353_26350 at 5784.266 kb on + strand, within AO353_26350 at 5784.266 kb on + strand, within AO353_26350 at 5784.272 kb on + strand, within AO353_26350 at 5784.272 kb on + strand, within AO353_26350 at 5784.272 kb on + strand, within AO353_26350 at 5784.273 kb on - strand, within AO353_26350 at 5784.273 kb on - strand, within AO353_26350 at 5784.273 kb on - strand, within AO353_26350 at 5784.286 kb on + strand, within AO353_26350 at 5784.286 kb on + strand, within AO353_26350 at 5784.286 kb on + strand, within AO353_26350 at 5784.287 kb on - strand, within AO353_26350 at 5784.287 kb on - strand, within AO353_26350 at 5784.287 kb on - strand, within AO353_26350 at 5784.362 kb on - strand at 5784.362 kb on - strand at 5784.435 kb on + strand at 5784.435 kb on + strand at 5784.435 kb on + strand at 5784.561 kb on - strand at 5784.607 kb on - strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.628 kb on + strand at 5784.629 kb on - strand at 5784.629 kb on - strand at 5784.653 kb on + strand at 5784.653 kb on + strand at 5784.654 kb on - strand at 5784.654 kb on - strand at 5784.654 kb on - strand at 5784.654 kb on - strand at 5784.654 kb on - strand at 5784.689 kb on + strand at 5784.689 kb on + strand at 5784.690 kb on - strand at 5784.690 kb on - strand at 5784.738 kb on - strand at 5784.991 kb on - strand at 5785.018 kb on + strand at 5785.019 kb on - strand at 5785.019 kb on - strand at 5785.040 kb on + strand at 5785.040 kb on + strand at 5785.040 kb on + strand at 5785.040 kb on + strand at 5785.041 kb on - strand at 5785.041 kb on - strand at 5785.041 kb on - strand at 5785.041 kb on - strand at 5785.041 kb on - strand at 5785.041 kb on - strand at 5785.051 kb on + strand at 5785.052 kb on - strand at 5785.132 kb on - strand, within AO353_26355 at 5785.146 kb on + strand, within AO353_26355 at 5785.147 kb on - strand, within AO353_26355 at 5785.147 kb on - strand, within AO353_26355 at 5785.147 kb on - strand, within AO353_26355 at 5785.147 kb on - strand, within AO353_26355 at 5785.149 kb on + strand, within AO353_26355 at 5785.150 kb on - strand, within AO353_26355 at 5785.150 kb on - strand, within AO353_26355 at 5785.156 kb on + strand, within AO353_26355 at 5785.187 kb on + strand, within AO353_26355 at 5785.188 kb on - strand, within AO353_26355 at 5785.188 kb on - strand, within AO353_26355 at 5785.188 kb on - strand, within AO353_26355 at 5785.202 kb on - strand at 5785.202 kb on - strand, within AO353_26355 at 5785.270 kb on - strand, within AO353_26355 at 5785.273 kb on + strand, within AO353_26355 at 5785.273 kb on + strand, within AO353_26355 at 5785.273 kb on + strand, within AO353_26355 at 5785.273 kb on + strand, within AO353_26355 at 5785.273 kb on + strand, within AO353_26355 at 5785.274 kb on - strand, within AO353_26355 at 5785.274 kb on - strand, within AO353_26355 at 5785.274 kb on - strand, within AO353_26355 at 5785.274 kb on - strand, within AO353_26355 at 5785.274 kb on - strand, within AO353_26355 at 5785.274 kb on - strand, within AO353_26355 at 5785.274 kb on - strand, within AO353_26355 at 5785.306 kb on + strand, within AO353_26355 at 5785.343 kb on + strand, within AO353_26355 at 5785.343 kb on + strand, within AO353_26355
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH8 remove 5,783,794 + -0.2 5,783,795 - +0.3 5,783,795 - -0.4 5,783,878 + AO353_26345 0.13 +0.2 5,783,879 - AO353_26345 0.14 +1.4 5,783,879 - AO353_26345 0.14 -0.6 5,783,921 + AO353_26345 0.30 -0.9 5,783,921 + AO353_26345 0.30 -0.8 5,783,922 - AO353_26345 0.30 +0.2 5,783,922 - AO353_26345 0.30 -0.2 5,783,923 + AO353_26345 0.31 +0.1 5,783,923 + AO353_26345 0.31 -0.4 5,783,923 + AO353_26345 0.31 -0.0 5,783,923 + AO353_26345 0.31 -0.1 5,783,923 + AO353_26345 0.31 +0.4 5,783,923 + AO353_26345 0.31 -1.9 5,783,924 - AO353_26345 0.31 +0.5 5,783,924 - AO353_26345 0.31 -0.2 5,783,924 - AO353_26345 0.31 -0.1 5,783,930 - AO353_26345 0.33 -0.2 5,783,986 + AO353_26345 0.55 -0.2 5,783,986 + AO353_26345 0.55 -1.2 5,783,986 + AO353_26345 0.55 +0.2 5,783,986 + AO353_26345 0.55 -0.2 5,783,987 - AO353_26345 0.55 -1.4 5,783,987 - AO353_26345 0.55 +0.4 5,783,990 - AO353_26345 0.57 -0.9 5,784,147 + +0.9 5,784,185 + AO353_26350 0.21 +0.4 5,784,185 + AO353_26350 0.21 -1.3 5,784,185 + AO353_26350 0.21 -0.1 5,784,185 + AO353_26350 0.21 +1.3 5,784,185 + AO353_26350 0.21 -2.1 5,784,186 - AO353_26350 0.22 -1.3 5,784,186 - AO353_26350 0.22 -0.9 5,784,186 - AO353_26350 0.22 +0.5 5,784,186 - AO353_26350 0.22 +0.1 5,784,186 - AO353_26350 0.22 +1.7 5,784,186 - AO353_26350 0.22 +2.7 5,784,266 + AO353_26350 0.57 +0.1 5,784,266 + AO353_26350 0.57 +2.1 5,784,272 + AO353_26350 0.60 +0.5 5,784,272 + AO353_26350 0.60 +0.2 5,784,272 + AO353_26350 0.60 -0.5 5,784,273 - AO353_26350 0.60 -0.1 5,784,273 - AO353_26350 0.60 -0.6 5,784,273 - AO353_26350 0.60 -0.2 5,784,286 + AO353_26350 0.66 -0.9 5,784,286 + AO353_26350 0.66 +0.1 5,784,286 + AO353_26350 0.66 +1.9 5,784,287 - AO353_26350 0.66 +0.8 5,784,287 - AO353_26350 0.66 -0.2 5,784,287 - AO353_26350 0.66 +0.3 5,784,362 - +0.2 5,784,362 - +0.6 5,784,435 + -0.4 5,784,435 + +0.7 5,784,435 + -0.2 5,784,561 - +1.0 5,784,607 - -0.5 5,784,628 + +1.8 5,784,628 + -0.2 5,784,628 + +0.7 5,784,628 + +0.8 5,784,628 + -0.5 5,784,628 + +0.2 5,784,628 + -0.5 5,784,628 + +0.6 5,784,628 + -0.5 5,784,628 + -0.7 5,784,629 - +0.2 5,784,629 - -0.3 5,784,653 + -1.1 5,784,653 + +0.6 5,784,654 - -0.4 5,784,654 - +0.6 5,784,654 - -0.2 5,784,654 - -0.9 5,784,654 - +1.3 5,784,689 + +0.1 5,784,689 + -0.7 5,784,690 - -0.3 5,784,690 - +1.0 5,784,738 - +0.2 5,784,991 - +0.1 5,785,018 + -0.1 5,785,019 - +1.6 5,785,019 - -1.5 5,785,040 + -0.1 5,785,040 + +1.1 5,785,040 + +2.4 5,785,040 + -0.5 5,785,041 - -0.3 5,785,041 - +0.9 5,785,041 - -1.2 5,785,041 - +1.3 5,785,041 - +0.9 5,785,041 - +1.2 5,785,051 + +0.8 5,785,052 - -1.2 5,785,132 - AO353_26355 0.20 +0.1 5,785,146 + AO353_26355 0.23 -1.3 5,785,147 - AO353_26355 0.24 +0.7 5,785,147 - AO353_26355 0.24 +1.8 5,785,147 - AO353_26355 0.24 -1.0 5,785,147 - AO353_26355 0.24 +0.8 5,785,149 + AO353_26355 0.24 -0.4 5,785,150 - AO353_26355 0.24 +0.8 5,785,150 - AO353_26355 0.24 +0.5 5,785,156 + AO353_26355 0.26 +0.5 5,785,187 + AO353_26355 0.32 -0.6 5,785,188 - AO353_26355 0.32 -0.1 5,785,188 - AO353_26355 0.32 +0.8 5,785,188 - AO353_26355 0.32 +0.7 5,785,202 - -0.7 5,785,202 - AO353_26355 0.35 -0.6 5,785,270 - AO353_26355 0.50 +0.9 5,785,273 + AO353_26355 0.50 +1.7 5,785,273 + AO353_26355 0.50 -1.6 5,785,273 + AO353_26355 0.50 +0.3 5,785,273 + AO353_26355 0.50 -0.6 5,785,273 + AO353_26355 0.50 +0.7 5,785,274 - AO353_26355 0.50 +0.6 5,785,274 - AO353_26355 0.50 -0.1 5,785,274 - AO353_26355 0.50 +1.1 5,785,274 - AO353_26355 0.50 -0.4 5,785,274 - AO353_26355 0.50 -0.3 5,785,274 - AO353_26355 0.50 +0.3 5,785,274 - AO353_26355 0.50 -2.3 5,785,306 + AO353_26355 0.57 -0.1 5,785,343 + AO353_26355 0.65 +0.6 5,785,343 + AO353_26355 0.65 -1.7
Or see this region's nucleotide sequence