Strain Fitness in Shewanella loihica PV-4 around Shew_1893

Experiment: Tetracycline 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1892 and Shew_1893 are separated by 58 nucleotidesShew_1893 and Shew_1894 are separated by 226 nucleotides Shew_1892: Shew_1892 - SNF2-related protein (RefSeq), at 2,183,542 to 2,187,027 _1892 Shew_1893: Shew_1893 - hypothetical protein (RefSeq), at 2,187,086 to 2,187,505 _1893 Shew_1894: Shew_1894 - hypothetical protein (RefSeq), at 2,187,732 to 2,189,663 _1894 Position (kb) 2187 2188Strain fitness (log2 ratio) -1 0 1 2at 2187.083 kb on + strandat 2187.148 kb on + strand, within Shew_1893at 2187.270 kb on + strand, within Shew_1893at 2187.292 kb on + strand, within Shew_1893at 2187.331 kb on + strand, within Shew_1893at 2187.462 kb on - strand, within Shew_1893at 2187.805 kb on + strandat 2187.927 kb on + strand, within Shew_1894at 2188.203 kb on + strand, within Shew_1894at 2188.462 kb on + strand, within Shew_1894

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0002 mg/ml
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2,187,083 + -0.2
2,187,148 + Shew_1893 0.15 +1.9
2,187,270 + Shew_1893 0.44 -0.1
2,187,292 + Shew_1893 0.49 -0.2
2,187,331 + Shew_1893 0.58 +0.8
2,187,462 - Shew_1893 0.90 +0.2
2,187,805 + -0.4
2,187,927 + Shew_1894 0.10 +0.1
2,188,203 + Shew_1894 0.24 -0.2
2,188,462 + Shew_1894 0.38 -0.4

Or see this region's nucleotide sequence