Strain Fitness in Shewanella loihica PV-4 around Shew_1489
Experiment: Tetracycline 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Tetracycline 0.0002 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 1,712,533 | - | Shew_1488 | 0.43 | +0.5 | |
| 1,713,505 | - | Shew_1489 | 0.10 | -0.2 | |
| 1,713,690 | + | Shew_1489 | 0.41 | +0.1 | |
| 1,713,707 | + | Shew_1489 | 0.44 | -0.2 | |
| 1,713,733 | - | Shew_1489 | 0.49 | -0.1 | |
| 1,713,863 | - | Shew_1489 | 0.71 | -0.4 | |
| 1,713,938 | - | Shew_1489 | 0.83 | -0.1 | |
| 1,713,974 | + | Shew_1489 | 0.90 | -0.4 | |
| 1,714,458 | - | Shew_1490 | 0.59 | -0.8 |
Or see this region's nucleotide sequence