Experiment: Tetracycline 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0312 and Shew_0313 are separated by 134 nucleotides Shew_0313 and Shew_0314 are separated by 116 nucleotides
Shew_0312: Shew_0312 - ABC transporter-related protein (RefSeq), at 338,680 to 340,860
_0312
Shew_0313: Shew_0313 - putative outer membrane adhesin like proteiin (RefSeq), at 340,995 to 355,505
_0313
Shew_0314: Shew_0314 - putative outer membrane adhesin like proteiin (RefSeq), at 355,622 to 360,283
_0314
Position (kb) 340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356 Strain fitness (log2 ratio) -1
0
1
2 at 340.307 kb on + strand, within Shew_0312 at 340.479 kb on + strand, within Shew_0312 at 340.479 kb on + strand, within Shew_0312 at 340.487 kb on - strand, within Shew_0312 at 340.770 kb on + strand at 340.811 kb on - strand at 340.868 kb on - strand at 340.977 kb on + strand at 341.098 kb on + strand at 341.397 kb on + strand at 341.422 kb on - strand at 341.603 kb on + strand at 341.716 kb on + strand at 341.902 kb on - strand at 341.949 kb on - strand at 341.972 kb on - strand at 341.999 kb on + strand at 342.031 kb on - strand at 342.829 kb on - strand, within Shew_0313 at 342.889 kb on + strand, within Shew_0313 at 343.091 kb on - strand, within Shew_0313 at 343.198 kb on - strand, within Shew_0313 at 343.538 kb on + strand, within Shew_0313 at 344.054 kb on - strand, within Shew_0313 at 344.335 kb on - strand, within Shew_0313 at 344.346 kb on + strand, within Shew_0313 at 344.352 kb on + strand, within Shew_0313 at 344.354 kb on - strand, within Shew_0313 at 344.354 kb on + strand, within Shew_0313 at 344.599 kb on + strand, within Shew_0313 at 345.476 kb on + strand, within Shew_0313 at 345.802 kb on - strand, within Shew_0313 at 345.971 kb on - strand, within Shew_0313 at 352.260 kb on + strand, within Shew_0313 at 352.339 kb on - strand, within Shew_0313 at 352.485 kb on - strand, within Shew_0313 at 352.538 kb on - strand, within Shew_0313 at 354.046 kb on - strand, within Shew_0313 at 354.097 kb on - strand at 354.216 kb on + strand at 354.239 kb on + strand at 354.285 kb on - strand at 355.054 kb on - strand at 355.072 kb on + strand at 355.827 kb on - strand at 355.952 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0002 mg/ml remove 340,307 + Shew_0312 0.75 +0.1 340,479 + Shew_0312 0.82 -0.3 340,479 + Shew_0312 0.82 +0.6 340,487 - Shew_0312 0.83 +0.1 340,770 + -0.1 340,811 - -0.2 340,868 - -0.1 340,977 + +0.1 341,098 + +0.2 341,397 + +0.3 341,422 - +0.3 341,603 + +0.6 341,716 + +1.0 341,902 - -0.1 341,949 - +0.0 341,972 - -0.1 341,999 + +0.3 342,031 - -0.7 342,829 - Shew_0313 0.13 +0.4 342,889 + Shew_0313 0.13 +0.2 343,091 - Shew_0313 0.14 +0.2 343,198 - Shew_0313 0.15 +0.0 343,538 + Shew_0313 0.18 -0.2 344,054 - Shew_0313 0.21 +2.2 344,335 - Shew_0313 0.23 +0.1 344,346 + Shew_0313 0.23 -0.9 344,352 + Shew_0313 0.23 -0.5 344,354 - Shew_0313 0.23 +0.4 344,354 + Shew_0313 0.23 +0.1 344,599 + Shew_0313 0.25 -0.2 345,476 + Shew_0313 0.31 -0.5 345,802 - Shew_0313 0.33 +0.9 345,971 - Shew_0313 0.34 +0.4 352,260 + Shew_0313 0.78 +0.8 352,339 - Shew_0313 0.78 +0.0 352,485 - Shew_0313 0.79 -0.2 352,538 - Shew_0313 0.80 +0.0 354,046 - Shew_0313 0.90 +0.1 354,097 - -0.1 354,216 + -0.0 354,239 + +0.1 354,285 - -0.1 355,054 - +0.3 355,072 + +0.8 355,827 - +0.0 355,952 + -0.1
Or see this region's nucleotide sequence