Experiment: LB no stress 48 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_554 and Pf6N2E2_555 are separated by 29 nucleotides Pf6N2E2_555 and Pf6N2E2_556 are separated by 83 nucleotides Pf6N2E2_556 and Pf6N2E2_557 are separated by 24 nucleotides Pf6N2E2_557 and Pf6N2E2_558 are separated by 63 nucleotides
Pf6N2E2_554 - Uncharacterized protein ImpC, at 625,804 to 627,285
_554
Pf6N2E2_555 - Uncharacterized protein ImpB, at 627,315 to 627,875
_555
Pf6N2E2_556 - hypothetical protein, at 627,959 to 628,075
_556
Pf6N2E2_557 - Uncharacterized protein homologous to Paeru. PA2364, at 628,100 to 628,549
_557
Pf6N2E2_558 - Uncharacterized protein ImpJ/VasE, at 628,613 to 629,944
_558
Position (kb) 627
628
629 Strain fitness (log2 ratio) -1
0
1
2 at 627.173 kb on + strand at 627.291 kb on + strand at 627.291 kb on + strand at 627.379 kb on - strand, within Pf6N2E2_555 at 627.814 kb on + strand, within Pf6N2E2_555 at 627.814 kb on + strand at 627.814 kb on + strand, within Pf6N2E2_555 at 627.814 kb on + strand, within Pf6N2E2_555 at 627.815 kb on - strand, within Pf6N2E2_555 at 627.815 kb on - strand, within Pf6N2E2_555 at 627.864 kb on - strand at 628.023 kb on + strand, within Pf6N2E2_556 at 628.036 kb on - strand, within Pf6N2E2_556 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.446 kb on - strand, within Pf6N2E2_557 at 628.446 kb on - strand, within Pf6N2E2_557 at 628.446 kb on - strand, within Pf6N2E2_557 at 628.446 kb on - strand, within Pf6N2E2_557 at 628.448 kb on - strand, within Pf6N2E2_557 at 628.448 kb on - strand, within Pf6N2E2_557 at 628.448 kb on - strand, within Pf6N2E2_557 at 628.612 kb on + strand at 628.613 kb on - strand at 628.925 kb on + strand, within Pf6N2E2_558 at 628.925 kb on + strand, within Pf6N2E2_558 at 628.925 kb on + strand, within Pf6N2E2_558 at 628.926 kb on - strand, within Pf6N2E2_558
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress 48 hours remove 627,173 + +0.7 627,291 + -0.4 627,291 + +0.2 627,379 - Pf6N2E2_555 0.11 +0.7 627,814 + Pf6N2E2_555 0.89 +0.6 627,814 + +1.4 627,814 + Pf6N2E2_555 0.89 +0.0 627,814 + Pf6N2E2_555 0.89 +0.1 627,815 - Pf6N2E2_555 0.89 -0.7 627,815 - Pf6N2E2_555 0.89 -0.5 627,864 - +2.1 628,023 + Pf6N2E2_556 0.55 -0.9 628,036 - Pf6N2E2_556 0.66 -0.4 628,445 + Pf6N2E2_557 0.77 -1.1 628,445 + Pf6N2E2_557 0.77 +0.5 628,445 + Pf6N2E2_557 0.77 +0.9 628,445 + Pf6N2E2_557 0.77 +1.1 628,445 + Pf6N2E2_557 0.77 +0.8 628,445 + Pf6N2E2_557 0.77 -0.3 628,445 + Pf6N2E2_557 0.77 +0.4 628,445 + Pf6N2E2_557 0.77 -1.4 628,446 - Pf6N2E2_557 0.77 -0.1 628,446 - Pf6N2E2_557 0.77 +0.1 628,446 - Pf6N2E2_557 0.77 +0.9 628,446 - Pf6N2E2_557 0.77 +0.5 628,448 - Pf6N2E2_557 0.77 +0.4 628,448 - Pf6N2E2_557 0.77 +1.1 628,448 - Pf6N2E2_557 0.77 -0.4 628,612 + -0.4 628,613 - +1.4 628,925 + Pf6N2E2_558 0.23 -1.1 628,925 + Pf6N2E2_558 0.23 -1.2 628,925 + Pf6N2E2_558 0.23 -1.1 628,926 - Pf6N2E2_558 0.23 -0.1
Or see this region's nucleotide sequence