Experiment: LB no stress 48 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1995 and Pf6N2E2_1996 are separated by 809 nucleotides Pf6N2E2_1996 and Pf6N2E2_1997 are separated by 446 nucleotides
Pf6N2E2_1995 - Type IV secretory pathway, VirB4 components, at 2,358,719 to 2,361,568
_1995
Pf6N2E2_1996 - DNA repair protein RadC, at 2,362,378 to 2,362,872
_1996
Pf6N2E2_1997 - FIG00956406: hypothetical protein, at 2,363,319 to 2,363,993
_1997
Position (kb)
2362
2363 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2361.403 kb on + strand at 2361.404 kb on - strand at 2361.410 kb on + strand at 2361.410 kb on + strand at 2361.410 kb on + strand at 2361.414 kb on + strand at 2361.415 kb on - strand at 2361.519 kb on + strand at 2361.596 kb on + strand at 2361.599 kb on + strand at 2361.600 kb on - strand at 2361.692 kb on + strand at 2361.692 kb on + strand at 2361.696 kb on + strand at 2361.696 kb on + strand at 2361.730 kb on + strand at 2361.788 kb on + strand at 2361.789 kb on - strand at 2362.006 kb on + strand at 2362.006 kb on + strand at 2362.007 kb on - strand at 2362.026 kb on + strand at 2362.175 kb on + strand at 2362.175 kb on + strand at 2362.309 kb on + strand at 2362.309 kb on + strand at 2362.309 kb on + strand at 2362.310 kb on - strand at 2362.310 kb on - strand at 2362.310 kb on - strand at 2362.432 kb on - strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.483 kb on - strand, within Pf6N2E2_1996 at 2362.483 kb on - strand, within Pf6N2E2_1996 at 2362.483 kb on - strand, within Pf6N2E2_1996 at 2362.501 kb on + strand, within Pf6N2E2_1996 at 2362.535 kb on + strand, within Pf6N2E2_1996 at 2362.536 kb on - strand, within Pf6N2E2_1996 at 2362.612 kb on + strand, within Pf6N2E2_1996 at 2362.689 kb on + strand, within Pf6N2E2_1996 at 2362.717 kb on - strand, within Pf6N2E2_1996 at 2362.945 kb on - strand at 2362.952 kb on - strand at 2362.952 kb on - strand at 2363.046 kb on + strand at 2363.191 kb on - strand at 2363.250 kb on + strand at 2363.251 kb on - strand at 2363.251 kb on - strand at 2363.278 kb on - strand at 2363.414 kb on - strand, within Pf6N2E2_1997 at 2363.466 kb on + strand, within Pf6N2E2_1997 at 2363.466 kb on + strand, within Pf6N2E2_1997 at 2363.539 kb on - strand, within Pf6N2E2_1997 at 2363.539 kb on - strand, within Pf6N2E2_1997 at 2363.865 kb on - strand, within Pf6N2E2_1997
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress 48 hours remove 2,361,403 + +1.4 2,361,404 - +0.5 2,361,410 + -0.1 2,361,410 + -2.1 2,361,410 + +1.0 2,361,414 + -0.6 2,361,415 - -2.5 2,361,519 + +1.1 2,361,596 + -2.5 2,361,599 + +0.1 2,361,600 - +1.9 2,361,692 + -0.7 2,361,692 + +1.0 2,361,696 + -0.1 2,361,696 + +0.3 2,361,730 + +0.6 2,361,788 + -0.3 2,361,789 - -2.2 2,362,006 + +0.5 2,362,006 + +0.9 2,362,007 - +0.7 2,362,026 + -1.8 2,362,175 + +1.3 2,362,175 + +0.7 2,362,309 + -0.1 2,362,309 + -0.3 2,362,309 + +0.3 2,362,310 - +0.1 2,362,310 - +1.5 2,362,310 - -0.5 2,362,432 - Pf6N2E2_1996 0.11 -0.0 2,362,482 + Pf6N2E2_1996 0.21 +0.5 2,362,482 + Pf6N2E2_1996 0.21 -1.4 2,362,482 + Pf6N2E2_1996 0.21 +0.8 2,362,482 + Pf6N2E2_1996 0.21 +0.2 2,362,482 + Pf6N2E2_1996 0.21 +0.9 2,362,482 + Pf6N2E2_1996 0.21 +0.1 2,362,483 - Pf6N2E2_1996 0.21 +1.9 2,362,483 - Pf6N2E2_1996 0.21 -0.8 2,362,483 - Pf6N2E2_1996 0.21 +0.3 2,362,501 + Pf6N2E2_1996 0.25 +0.6 2,362,535 + Pf6N2E2_1996 0.32 +0.8 2,362,536 - Pf6N2E2_1996 0.32 +0.1 2,362,612 + Pf6N2E2_1996 0.47 +1.3 2,362,689 + Pf6N2E2_1996 0.63 +0.3 2,362,717 - Pf6N2E2_1996 0.68 -0.1 2,362,945 - +0.1 2,362,952 - +0.3 2,362,952 - +1.3 2,363,046 + -0.5 2,363,191 - -0.8 2,363,250 + +0.5 2,363,251 - -0.6 2,363,251 - +0.6 2,363,278 - -0.5 2,363,414 - Pf6N2E2_1997 0.14 +2.3 2,363,466 + Pf6N2E2_1997 0.22 +0.5 2,363,466 + Pf6N2E2_1997 0.22 -0.8 2,363,539 - Pf6N2E2_1997 0.33 +0.9 2,363,539 - Pf6N2E2_1997 0.33 +0.6 2,363,865 - Pf6N2E2_1997 0.81 +0.2
Or see this region's nucleotide sequence