Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06190

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06180 and BWI76_RS06185 are separated by 334 nucleotidesBWI76_RS06185 and BWI76_RS06190 are separated by 71 nucleotidesBWI76_RS06190 and BWI76_RS06195 are separated by 268 nucleotides BWI76_RS06180: BWI76_RS06180 - hypothetical protein, at 1,297,344 to 1,298,042 _RS06180 BWI76_RS06185: BWI76_RS06185 - shikimate kinase II, at 1,298,377 to 1,298,904 _RS06185 BWI76_RS06190: BWI76_RS06190 - hypothetical protein, at 1,298,976 to 1,299,167 _RS06190 BWI76_RS06195: BWI76_RS06195 - hypothetical protein, at 1,299,436 to 1,300,101 _RS06195 Position (kb) 1298 1299 1300Strain fitness (log2 ratio) -2 -1 0 1at 1298.038 kb on - strandat 1298.039 kb on + strandat 1298.052 kb on - strandat 1298.125 kb on - strandat 1298.125 kb on - strandat 1298.125 kb on - strandat 1298.321 kb on - strandat 1298.359 kb on + strandat 1298.367 kb on - strandat 1298.367 kb on - strandat 1298.456 kb on + strand, within BWI76_RS06185at 1298.464 kb on - strand, within BWI76_RS06185at 1298.500 kb on - strand, within BWI76_RS06185at 1298.615 kb on + strand, within BWI76_RS06185at 1298.623 kb on - strand, within BWI76_RS06185at 1298.623 kb on - strand, within BWI76_RS06185at 1298.623 kb on - strand, within BWI76_RS06185at 1298.623 kb on - strand, within BWI76_RS06185at 1298.645 kb on - strand, within BWI76_RS06185at 1298.672 kb on + strand, within BWI76_RS06185at 1298.705 kb on - strand, within BWI76_RS06185at 1298.762 kb on + strand, within BWI76_RS06185at 1298.805 kb on - strand, within BWI76_RS06185at 1298.898 kb on - strandat 1299.063 kb on - strand, within BWI76_RS06190at 1299.063 kb on - strand, within BWI76_RS06190at 1299.063 kb on - strand, within BWI76_RS06190at 1299.325 kb on - strandat 1299.477 kb on + strandat 1299.630 kb on + strand, within BWI76_RS06195at 1299.663 kb on - strand, within BWI76_RS06195at 1299.665 kb on + strand, within BWI76_RS06195at 1299.717 kb on + strand, within BWI76_RS06195at 1299.773 kb on + strand, within BWI76_RS06195at 1299.809 kb on + strand, within BWI76_RS06195at 1299.809 kb on + strand, within BWI76_RS06195at 1299.817 kb on - strand, within BWI76_RS06195at 1299.891 kb on + strand, within BWI76_RS06195at 1299.902 kb on + strand, within BWI76_RS06195at 1300.156 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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1,298,038 - +1.3
1,298,039 + +0.2
1,298,052 - -1.1
1,298,125 - +0.1
1,298,125 - -0.2
1,298,125 - +0.1
1,298,321 - -0.4
1,298,359 + +0.8
1,298,367 - -0.7
1,298,367 - +1.7
1,298,456 + BWI76_RS06185 0.15 -1.1
1,298,464 - BWI76_RS06185 0.16 -0.4
1,298,500 - BWI76_RS06185 0.23 -0.5
1,298,615 + BWI76_RS06185 0.45 -0.7
1,298,623 - BWI76_RS06185 0.47 +0.3
1,298,623 - BWI76_RS06185 0.47 +0.1
1,298,623 - BWI76_RS06185 0.47 -0.4
1,298,623 - BWI76_RS06185 0.47 -0.1
1,298,645 - BWI76_RS06185 0.51 -0.3
1,298,672 + BWI76_RS06185 0.56 -2.0
1,298,705 - BWI76_RS06185 0.62 -0.5
1,298,762 + BWI76_RS06185 0.73 -0.1
1,298,805 - BWI76_RS06185 0.81 -1.5
1,298,898 - -0.2
1,299,063 - BWI76_RS06190 0.45 -1.7
1,299,063 - BWI76_RS06190 0.45 -0.6
1,299,063 - BWI76_RS06190 0.45 -0.8
1,299,325 - -0.0
1,299,477 + +0.8
1,299,630 + BWI76_RS06195 0.29 +0.0
1,299,663 - BWI76_RS06195 0.34 +0.3
1,299,665 + BWI76_RS06195 0.34 +0.1
1,299,717 + BWI76_RS06195 0.42 +0.1
1,299,773 + BWI76_RS06195 0.51 +0.2
1,299,809 + BWI76_RS06195 0.56 -0.6
1,299,809 + BWI76_RS06195 0.56 +0.0
1,299,817 - BWI76_RS06195 0.57 +0.1
1,299,891 + BWI76_RS06195 0.68 -0.5
1,299,902 + BWI76_RS06195 0.70 +0.1
1,300,156 - -0.9

Or see this region's nucleotide sequence