Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21555

Experiment: Minimal media pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21550 and AO353_21555 are separated by 28 nucleotidesAO353_21555 and AO353_21560 are separated by 226 nucleotidesAO353_21560 and AO353_21565 are separated by 62 nucleotides AO353_21550: AO353_21550 - EvpB family type VI secretion protein, at 4,717,015 to 4,718,502 _21550 AO353_21555: AO353_21555 - type VI secretion protein, at 4,718,531 to 4,719,103 _21555 AO353_21560: AO353_21560 - type VI secretion protein, at 4,719,330 to 4,719,779 _21560 AO353_21565: AO353_21565 - type VI secretion protein, at 4,719,842 to 4,721,173 _21565 Position (kb) 4718 4719 4720Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4717.619 kb on + strand, within AO353_21550at 4717.619 kb on + strand, within AO353_21550at 4717.619 kb on + strand, within AO353_21550at 4717.619 kb on + strand, within AO353_21550at 4717.619 kb on + strand, within AO353_21550at 4717.620 kb on - strand, within AO353_21550at 4717.620 kb on - strand, within AO353_21550at 4717.679 kb on + strand, within AO353_21550at 4717.680 kb on - strand, within AO353_21550at 4717.680 kb on - strand, within AO353_21550at 4717.680 kb on - strand, within AO353_21550at 4717.680 kb on - strand, within AO353_21550at 4717.715 kb on + strand, within AO353_21550at 4717.715 kb on + strand, within AO353_21550at 4717.715 kb on + strand, within AO353_21550at 4717.715 kb on + strand, within AO353_21550at 4717.716 kb on - strand, within AO353_21550at 4717.716 kb on - strand, within AO353_21550at 4717.752 kb on - strand, within AO353_21550at 4717.794 kb on - strand, within AO353_21550at 4718.009 kb on + strand, within AO353_21550at 4718.009 kb on + strand, within AO353_21550at 4718.009 kb on + strand, within AO353_21550at 4718.009 kb on + strand, within AO353_21550at 4718.010 kb on - strand, within AO353_21550at 4718.010 kb on - strand, within AO353_21550at 4718.010 kb on - strand, within AO353_21550at 4718.010 kb on - strand, within AO353_21550at 4718.010 kb on - strand, within AO353_21550at 4718.055 kb on - strand, within AO353_21550at 4718.066 kb on + strand, within AO353_21550at 4718.066 kb on + strand, within AO353_21550at 4718.067 kb on - strand, within AO353_21550at 4718.067 kb on - strand, within AO353_21550at 4718.067 kb on - strand, within AO353_21550at 4718.344 kb on + strand, within AO353_21550at 4718.344 kb on + strand, within AO353_21550at 4718.345 kb on - strand, within AO353_21550at 4718.385 kb on - strandat 4718.385 kb on - strandat 4718.760 kb on - strand, within AO353_21555at 4719.026 kb on - strand, within AO353_21555at 4719.026 kb on - strand, within AO353_21555at 4719.029 kb on + strand, within AO353_21555at 4719.029 kb on + strand, within AO353_21555at 4719.029 kb on + strand, within AO353_21555at 4719.030 kb on - strand, within AO353_21555at 4719.042 kb on + strand, within AO353_21555at 4719.042 kb on + strand, within AO353_21555at 4719.042 kb on + strand, within AO353_21555at 4719.042 kb on + strand, within AO353_21555at 4719.042 kb on + strand, within AO353_21555at 4719.042 kb on + strand, within AO353_21555at 4719.042 kb on + strand, within AO353_21555at 4719.043 kb on - strand, within AO353_21555at 4719.043 kb on - strand, within AO353_21555at 4719.043 kb on - strand, within AO353_21555at 4719.043 kb on - strand, within AO353_21555at 4719.092 kb on - strandat 4719.092 kb on - strandat 4719.177 kb on + strandat 4719.178 kb on - strandat 4719.178 kb on - strandat 4719.182 kb on + strandat 4719.251 kb on + strandat 4719.251 kb on + strandat 4719.251 kb on + strandat 4719.263 kb on + strandat 4719.274 kb on + strandat 4719.274 kb on + strandat 4719.275 kb on - strandat 4719.277 kb on - strandat 4719.277 kb on - strandat 4719.277 kb on - strandat 4719.348 kb on - strandat 4719.368 kb on - strandat 4719.368 kb on - strandat 4719.675 kb on + strand, within AO353_21560at 4719.675 kb on + strand, within AO353_21560at 4719.675 kb on + strand, within AO353_21560at 4719.675 kb on + strand, within AO353_21560at 4719.675 kb on + strand, within AO353_21560at 4719.676 kb on - strand, within AO353_21560at 4719.676 kb on - strand, within AO353_21560at 4719.676 kb on - strand, within AO353_21560at 4719.676 kb on - strand, within AO353_21560at 4719.676 kb on - strand, within AO353_21560at 4719.676 kb on - strand, within AO353_21560at 4719.676 kb on - strand, within AO353_21560at 4719.676 kb on - strand, within AO353_21560at 4719.677 kb on + strand, within AO353_21560at 4719.678 kb on - strand, within AO353_21560at 4719.842 kb on - strandat 4719.853 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH7
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4,717,619 + AO353_21550 0.41 +0.9
4,717,619 + AO353_21550 0.41 -2.6
4,717,619 + AO353_21550 0.41 +0.0
4,717,619 + AO353_21550 0.41 +0.5
4,717,619 + AO353_21550 0.41 +1.1
4,717,620 - AO353_21550 0.41 +1.0
4,717,620 - AO353_21550 0.41 +1.0
4,717,679 + AO353_21550 0.45 -0.9
4,717,680 - AO353_21550 0.45 -2.2
4,717,680 - AO353_21550 0.45 -0.6
4,717,680 - AO353_21550 0.45 -0.2
4,717,680 - AO353_21550 0.45 -2.1
4,717,715 + AO353_21550 0.47 -0.5
4,717,715 + AO353_21550 0.47 +0.9
4,717,715 + AO353_21550 0.47 +2.0
4,717,715 + AO353_21550 0.47 -0.8
4,717,716 - AO353_21550 0.47 +0.0
4,717,716 - AO353_21550 0.47 +0.8
4,717,752 - AO353_21550 0.50 -2.7
4,717,794 - AO353_21550 0.52 +1.2
4,718,009 + AO353_21550 0.67 +0.5
4,718,009 + AO353_21550 0.67 +0.8
4,718,009 + AO353_21550 0.67 +3.7
4,718,009 + AO353_21550 0.67 -1.6
4,718,010 - AO353_21550 0.67 -0.7
4,718,010 - AO353_21550 0.67 -1.0
4,718,010 - AO353_21550 0.67 -0.9
4,718,010 - AO353_21550 0.67 +0.6
4,718,010 - AO353_21550 0.67 -1.3
4,718,055 - AO353_21550 0.70 +0.4
4,718,066 + AO353_21550 0.71 +0.5
4,718,066 + AO353_21550 0.71 -0.2
4,718,067 - AO353_21550 0.71 +0.0
4,718,067 - AO353_21550 0.71 -1.1
4,718,067 - AO353_21550 0.71 -1.3
4,718,344 + AO353_21550 0.89 -2.1
4,718,344 + AO353_21550 0.89 +0.2
4,718,345 - AO353_21550 0.89 +0.7
4,718,385 - -1.1
4,718,385 - +0.6
4,718,760 - AO353_21555 0.40 +0.4
4,719,026 - AO353_21555 0.86 -0.7
4,719,026 - AO353_21555 0.86 +0.9
4,719,029 + AO353_21555 0.87 +0.3
4,719,029 + AO353_21555 0.87 -0.1
4,719,029 + AO353_21555 0.87 +1.3
4,719,030 - AO353_21555 0.87 -0.1
4,719,042 + AO353_21555 0.89 -0.5
4,719,042 + AO353_21555 0.89 -0.2
4,719,042 + AO353_21555 0.89 -0.7
4,719,042 + AO353_21555 0.89 -1.5
4,719,042 + AO353_21555 0.89 -0.8
4,719,042 + AO353_21555 0.89 -1.4
4,719,042 + AO353_21555 0.89 -0.1
4,719,043 - AO353_21555 0.89 +0.3
4,719,043 - AO353_21555 0.89 +0.0
4,719,043 - AO353_21555 0.89 -0.1
4,719,043 - AO353_21555 0.89 +0.7
4,719,092 - -1.0
4,719,092 - +0.0
4,719,177 + -0.5
4,719,178 - +1.5
4,719,178 - +2.1
4,719,182 + -0.5
4,719,251 + -1.1
4,719,251 + -0.2
4,719,251 + +0.2
4,719,263 + -0.5
4,719,274 + +0.8
4,719,274 + +0.1
4,719,275 - +0.8
4,719,277 - +0.5
4,719,277 - -1.8
4,719,277 - -2.1
4,719,348 - -1.4
4,719,368 - +0.7
4,719,368 - -0.2
4,719,675 + AO353_21560 0.77 +0.4
4,719,675 + AO353_21560 0.77 -2.8
4,719,675 + AO353_21560 0.77 +0.5
4,719,675 + AO353_21560 0.77 -1.7
4,719,675 + AO353_21560 0.77 -1.7
4,719,676 - AO353_21560 0.77 -0.5
4,719,676 - AO353_21560 0.77 -0.5
4,719,676 - AO353_21560 0.77 -0.7
4,719,676 - AO353_21560 0.77 -2.1
4,719,676 - AO353_21560 0.77 +0.7
4,719,676 - AO353_21560 0.77 -2.4
4,719,676 - AO353_21560 0.77 -1.7
4,719,676 - AO353_21560 0.77 -0.7
4,719,677 + AO353_21560 0.77 -1.2
4,719,678 - AO353_21560 0.77 +0.0
4,719,842 - +0.7
4,719,853 - -0.8

Or see this region's nucleotide sequence