Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00035

Experiment: Minimal media pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_00030 and AO353_00035 are separated by 329 nucleotidesAO353_00035 and AO353_00040 are separated by 91 nucleotides AO353_00030: AO353_00030 - glutathione S-transferase, at 5,896 to 6,594 _00030 AO353_00035: AO353_00035 - GTP-binding protein, at 6,924 to 7,598 _00035 AO353_00040: AO353_00040 - hypothetical protein, at 7,690 to 8,745 _00040 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 5.962 kb on + strandat 5.962 kb on + strandat 5.962 kb on + strandat 5.963 kb on - strandat 6.005 kb on + strand, within AO353_00030at 6.005 kb on + strand, within AO353_00030at 6.005 kb on + strand, within AO353_00030at 6.005 kb on + strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.059 kb on + strand, within AO353_00030at 6.111 kb on + strand, within AO353_00030at 6.111 kb on + strandat 6.112 kb on - strand, within AO353_00030at 6.112 kb on - strand, within AO353_00030at 6.164 kb on + strand, within AO353_00030at 6.164 kb on + strand, within AO353_00030at 6.165 kb on - strand, within AO353_00030at 6.183 kb on + strand, within AO353_00030at 6.184 kb on - strand, within AO353_00030at 6.257 kb on + strand, within AO353_00030at 6.308 kb on + strand, within AO353_00030at 6.308 kb on + strand, within AO353_00030at 6.308 kb on + strand, within AO353_00030at 6.524 kb on + strand, within AO353_00030at 6.525 kb on - strandat 6.532 kb on + strandat 6.532 kb on + strandat 6.533 kb on - strandat 6.669 kb on - strandat 6.669 kb on - strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.674 kb on - strandat 6.674 kb on - strandat 6.674 kb on - strandat 6.674 kb on - strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.676 kb on - strandat 6.676 kb on - strandat 6.676 kb on - strandat 6.702 kb on - strandat 6.702 kb on - strandat 6.755 kb on + strandat 6.755 kb on + strandat 6.760 kb on + strandat 6.760 kb on + strandat 6.760 kb on + strandat 6.760 kb on + strandat 6.760 kb on + strandat 6.761 kb on - strandat 6.761 kb on - strandat 6.761 kb on - strandat 6.917 kb on + strandat 6.917 kb on + strandat 6.918 kb on - strandat 6.918 kb on - strandat 6.918 kb on - strandat 6.918 kb on - strandat 6.918 kb on - strandat 6.918 kb on - strandat 6.947 kb on + strandat 6.947 kb on + strandat 7.156 kb on + strand, within AO353_00035at 7.156 kb on + strand, within AO353_00035at 7.157 kb on - strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.186 kb on - strand, within AO353_00035at 7.186 kb on - strand, within AO353_00035at 7.186 kb on - strand, within AO353_00035at 7.186 kb on - strand, within AO353_00035at 7.186 kb on - strand, within AO353_00035at 7.242 kb on + strand, within AO353_00035at 7.242 kb on + strand, within AO353_00035at 7.242 kb on + strand, within AO353_00035at 7.242 kb on + strand, within AO353_00035at 7.242 kb on + strand, within AO353_00035at 7.243 kb on - strand, within AO353_00035at 7.248 kb on + strand, within AO353_00035at 7.248 kb on + strand, within AO353_00035at 7.248 kb on + strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.351 kb on + strand, within AO353_00035at 7.352 kb on - strand, within AO353_00035at 7.365 kb on + strand, within AO353_00035at 7.365 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.384 kb on - strandat 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.404 kb on + strand, within AO353_00035at 7.405 kb on - strand, within AO353_00035at 7.500 kb on + strand, within AO353_00035at 7.500 kb on + strand, within AO353_00035at 7.500 kb on + strand, within AO353_00035at 7.500 kb on + strand, within AO353_00035at 7.500 kb on + strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.554 kb on + strandat 7.596 kb on + strandat 7.596 kb on + strandat 7.597 kb on - strandat 7.597 kb on - strandat 7.638 kb on - strandat 7.652 kb on + strandat 7.652 kb on + strandat 7.652 kb on + strandat 7.652 kb on + strandat 7.652 kb on + strandat 7.652 kb on + strandat 7.653 kb on - strandat 7.653 kb on - strandat 7.653 kb on - strandat 7.653 kb on - strandat 7.653 kb on - strandat 7.670 kb on + strandat 7.670 kb on + strandat 7.670 kb on + strandat 7.671 kb on - strandat 7.689 kb on + strandat 7.689 kb on + strandat 7.689 kb on + strandat 7.689 kb on + strandat 7.689 kb on + strandat 7.689 kb on + strandat 7.689 kb on + strandat 7.690 kb on - strandat 7.690 kb on - strandat 7.690 kb on - strandat 7.690 kb on - strandat 7.690 kb on - strandat 7.777 kb on + strandat 7.777 kb on + strandat 7.777 kb on + strandat 7.780 kb on + strandat 7.780 kb on + strandat 7.780 kb on + strandat 7.780 kb on + strandat 7.780 kb on + strandat 7.780 kb on + strandat 7.780 kb on + strandat 7.780 kb on + strandat 7.780 kb on + strandat 7.780 kb on + strandat 7.780 kb on + strandat 7.780 kb on + strandat 7.781 kb on - strandat 7.781 kb on - strandat 7.781 kb on - strandat 7.781 kb on - strandat 7.781 kb on - strandat 7.781 kb on - strandat 7.781 kb on - strandat 7.798 kb on + strand, within AO353_00040at 7.799 kb on - strand, within AO353_00040at 7.799 kb on - strand, within AO353_00040at 7.799 kb on - strand, within AO353_00040at 7.801 kb on + strand, within AO353_00040at 7.801 kb on + strand, within AO353_00040at 7.801 kb on + strand, within AO353_00040at 7.801 kb on + strand, within AO353_00040at 7.801 kb on + strand, within AO353_00040at 7.802 kb on - strand, within AO353_00040at 7.802 kb on - strand, within AO353_00040at 7.802 kb on - strand, within AO353_00040at 7.802 kb on - strand, within AO353_00040at 7.802 kb on - strand, within AO353_00040at 7.894 kb on + strand, within AO353_00040at 7.894 kb on + strand, within AO353_00040at 7.894 kb on + strand, within AO353_00040at 7.894 kb on + strand, within AO353_00040at 7.894 kb on + strand, within AO353_00040at 7.895 kb on - strand, within AO353_00040at 7.906 kb on + strand, within AO353_00040at 7.906 kb on + strand, within AO353_00040at 7.906 kb on + strand, within AO353_00040at 7.907 kb on - strand, within AO353_00040at 7.907 kb on - strand, within AO353_00040at 7.907 kb on - strand, within AO353_00040at 7.967 kb on + strand, within AO353_00040at 7.967 kb on + strand, within AO353_00040at 7.968 kb on - strand, within AO353_00040at 7.968 kb on - strand, within AO353_00040at 8.189 kb on + strand, within AO353_00040at 8.284 kb on + strand, within AO353_00040at 8.284 kb on + strand, within AO353_00040at 8.284 kb on + strand, within AO353_00040at 8.284 kb on + strand, within AO353_00040at 8.285 kb on - strand, within AO353_00040at 8.285 kb on - strand, within AO353_00040at 8.285 kb on - strand, within AO353_00040at 8.285 kb on - strand, within AO353_00040at 8.285 kb on - strand, within AO353_00040at 8.285 kb on - strand, within AO353_00040at 8.404 kb on + strand, within AO353_00040at 8.404 kb on + strand, within AO353_00040at 8.404 kb on + strand, within AO353_00040at 8.404 kb on + strand, within AO353_00040at 8.404 kb on + strand, within AO353_00040at 8.404 kb on + strand, within AO353_00040at 8.404 kb on + strand, within AO353_00040at 8.404 kb on + strand, within AO353_00040at 8.404 kb on + strand, within AO353_00040at 8.405 kb on - strand, within AO353_00040at 8.405 kb on - strand, within AO353_00040at 8.405 kb on - strand, within AO353_00040at 8.405 kb on - strand, within AO353_00040at 8.405 kb on - strand, within AO353_00040at 8.405 kb on - strand, within AO353_00040at 8.405 kb on - strand, within AO353_00040at 8.486 kb on + strand, within AO353_00040

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH7
remove
5,962 + +1.5
5,962 + -0.4
5,962 + +1.2
5,963 - +0.9
6,005 + AO353_00030 0.16 -1.9
6,005 + AO353_00030 0.16 -0.3
6,005 + AO353_00030 0.16 -0.9
6,005 + AO353_00030 0.16 +1.0
6,006 - AO353_00030 0.16 +0.6
6,006 - AO353_00030 0.16 +1.0
6,006 - AO353_00030 0.16 -1.9
6,006 - AO353_00030 0.16 -1.2
6,006 - AO353_00030 0.16 -0.9
6,059 + AO353_00030 0.23 -1.1
6,111 + AO353_00030 0.31 -0.6
6,111 + -1.3
6,112 - AO353_00030 0.31 +0.8
6,112 - AO353_00030 0.31 -1.1
6,164 + AO353_00030 0.38 +0.9
6,164 + AO353_00030 0.38 -1.6
6,165 - AO353_00030 0.38 -0.2
6,183 + AO353_00030 0.41 -0.4
6,184 - AO353_00030 0.41 +0.6
6,257 + AO353_00030 0.52 -0.9
6,308 + AO353_00030 0.59 +0.7
6,308 + AO353_00030 0.59 +0.1
6,308 + AO353_00030 0.59 -0.6
6,524 + AO353_00030 0.90 +2.1
6,525 - -0.9
6,532 + -0.3
6,532 + +0.1
6,533 - +0.4
6,669 - -1.6
6,669 - +0.7
6,673 + +2.1
6,673 + +0.1
6,673 + +1.7
6,673 + -0.3
6,673 + +0.9
6,673 + -0.1
6,674 - +0.5
6,674 - -2.0
6,674 - -2.0
6,674 - +0.1
6,675 + +0.5
6,675 + -0.0
6,675 + +0.2
6,675 + -0.3
6,675 + -1.1
6,675 + +0.1
6,675 + +0.9
6,676 - -0.1
6,676 - -1.1
6,676 - +0.1
6,702 - -0.6
6,702 - +0.6
6,755 + -1.9
6,755 + -0.8
6,760 + +1.7
6,760 + -1.1
6,760 + +0.2
6,760 + +0.3
6,760 + -0.3
6,761 - +0.2
6,761 - +1.0
6,761 - +0.7
6,917 + +1.0
6,917 + -0.4
6,918 - +0.7
6,918 - -0.3
6,918 - -0.9
6,918 - +0.6
6,918 - -1.1
6,918 - +0.6
6,947 + +1.7
6,947 + -0.0
7,156 + AO353_00035 0.34 -0.9
7,156 + AO353_00035 0.34 -0.4
7,157 - AO353_00035 0.35 +0.9
7,185 + AO353_00035 0.39 +1.7
7,185 + AO353_00035 0.39 +2.0
7,185 + AO353_00035 0.39 +0.7
7,185 + AO353_00035 0.39 -0.9
7,185 + AO353_00035 0.39 +1.6
7,185 + AO353_00035 0.39 +0.7
7,185 + AO353_00035 0.39 +2.2
7,186 - AO353_00035 0.39 +0.7
7,186 - AO353_00035 0.39 -0.0
7,186 - AO353_00035 0.39 -0.7
7,186 - AO353_00035 0.39 -0.9
7,186 - AO353_00035 0.39 +0.1
7,242 + AO353_00035 0.47 +0.1
7,242 + AO353_00035 0.47 +1.5
7,242 + AO353_00035 0.47 +0.2
7,242 + AO353_00035 0.47 +0.4
7,242 + AO353_00035 0.47 +0.7
7,243 - AO353_00035 0.47 +0.5
7,248 + AO353_00035 0.48 -1.5
7,248 + AO353_00035 0.48 -0.5
7,248 + AO353_00035 0.48 -0.3
7,249 - AO353_00035 0.48 +0.9
7,249 - AO353_00035 0.48 -0.1
7,249 - AO353_00035 0.48 -2.3
7,249 - AO353_00035 0.48 +1.3
7,249 - AO353_00035 0.48 -0.4
7,249 - AO353_00035 0.48 +1.2
7,351 + AO353_00035 0.63 +0.5
7,352 - AO353_00035 0.63 +1.1
7,365 + AO353_00035 0.65 +0.0
7,365 + AO353_00035 0.65 -0.9
7,383 + AO353_00035 0.68 -0.7
7,383 + AO353_00035 0.68 -0.6
7,383 + AO353_00035 0.68 +2.1
7,383 + AO353_00035 0.68 -2.0
7,383 + AO353_00035 0.68 +1.2
7,383 + AO353_00035 0.68 +0.5
7,383 + AO353_00035 0.68 -1.3
7,384 - +1.1
7,384 - AO353_00035 0.68 -1.2
7,384 - AO353_00035 0.68 +1.0
7,384 - AO353_00035 0.68 -0.6
7,384 - AO353_00035 0.68 +1.7
7,384 - AO353_00035 0.68 -0.9
7,384 - AO353_00035 0.68 -0.9
7,384 - AO353_00035 0.68 +0.7
7,384 - AO353_00035 0.68 -0.4
7,384 - AO353_00035 0.68 -0.2
7,404 + AO353_00035 0.71 +0.6
7,405 - AO353_00035 0.71 +0.2
7,500 + AO353_00035 0.85 +0.8
7,500 + AO353_00035 0.85 +0.1
7,500 + AO353_00035 0.85 +1.0
7,500 + AO353_00035 0.85 -1.7
7,500 + AO353_00035 0.85 +1.3
7,501 - AO353_00035 0.85 -0.7
7,501 - AO353_00035 0.85 +0.6
7,501 - AO353_00035 0.85 +1.2
7,501 - AO353_00035 0.85 +1.3
7,501 - AO353_00035 0.85 +0.5
7,501 - AO353_00035 0.85 +0.4
7,501 - AO353_00035 0.85 -0.6
7,501 - AO353_00035 0.85 +2.1
7,501 - AO353_00035 0.85 -1.5
7,554 + -1.3
7,596 + -0.1
7,596 + -1.1
7,597 - -0.4
7,597 - +0.5
7,638 - +0.9
7,652 + +0.3
7,652 + +0.3
7,652 + +0.6
7,652 + +1.0
7,652 + +0.5
7,652 + +1.5
7,653 - +0.3
7,653 - +0.4
7,653 - +0.7
7,653 - -0.3
7,653 - -1.3
7,670 + -0.1
7,670 + -0.1
7,670 + -0.4
7,671 - +2.5
7,689 + +0.5
7,689 + +0.8
7,689 + -0.3
7,689 + +0.7
7,689 + +0.8
7,689 + -0.6
7,689 + +0.7
7,690 - +0.5
7,690 - +1.5
7,690 - +0.2
7,690 - +0.2
7,690 - -0.8
7,777 + +0.2
7,777 + +0.9
7,777 + +0.7
7,780 + -0.6
7,780 + -0.4
7,780 + +1.0
7,780 + +0.2
7,780 + +0.2
7,780 + +2.5
7,780 + -0.1
7,780 + +0.1
7,780 + +1.7
7,780 + +0.6
7,780 + +2.1
7,780 + +0.9
7,781 - +0.9
7,781 - +0.5
7,781 - +0.0
7,781 - -1.7
7,781 - +0.1
7,781 - +1.7
7,781 - -1.1
7,798 + AO353_00040 0.10 -2.0
7,799 - AO353_00040 0.10 +0.1
7,799 - AO353_00040 0.10 -1.0
7,799 - AO353_00040 0.10 -1.2
7,801 + AO353_00040 0.11 +2.1
7,801 + AO353_00040 0.11 +0.3
7,801 + AO353_00040 0.11 -0.1
7,801 + AO353_00040 0.11 +1.5
7,801 + AO353_00040 0.11 +0.3
7,802 - AO353_00040 0.11 -0.5
7,802 - AO353_00040 0.11 -1.4
7,802 - AO353_00040 0.11 -0.6
7,802 - AO353_00040 0.11 -0.0
7,802 - AO353_00040 0.11 -2.0
7,894 + AO353_00040 0.19 +1.0
7,894 + AO353_00040 0.19 +0.5
7,894 + AO353_00040 0.19 -0.1
7,894 + AO353_00040 0.19 -0.5
7,894 + AO353_00040 0.19 +0.1
7,895 - AO353_00040 0.19 +0.3
7,906 + AO353_00040 0.20 +0.9
7,906 + AO353_00040 0.20 -1.4
7,906 + AO353_00040 0.20 -2.5
7,907 - AO353_00040 0.21 +0.4
7,907 - AO353_00040 0.21 -1.9
7,907 - AO353_00040 0.21 -0.3
7,967 + AO353_00040 0.26 +1.0
7,967 + AO353_00040 0.26 -0.1
7,968 - AO353_00040 0.26 -0.0
7,968 - AO353_00040 0.26 -0.6
8,189 + AO353_00040 0.47 +0.5
8,284 + AO353_00040 0.56 -0.3
8,284 + AO353_00040 0.56 -1.1
8,284 + AO353_00040 0.56 +0.9
8,284 + AO353_00040 0.56 -0.2
8,285 - AO353_00040 0.56 -1.1
8,285 - AO353_00040 0.56 -2.2
8,285 - AO353_00040 0.56 +1.0
8,285 - AO353_00040 0.56 -2.1
8,285 - AO353_00040 0.56 +1.2
8,285 - AO353_00040 0.56 +1.0
8,404 + AO353_00040 0.68 +0.4
8,404 + AO353_00040 0.68 +0.9
8,404 + AO353_00040 0.68 +0.1
8,404 + AO353_00040 0.68 +0.7
8,404 + AO353_00040 0.68 +1.0
8,404 + AO353_00040 0.68 -0.5
8,404 + AO353_00040 0.68 +0.4
8,404 + AO353_00040 0.68 +1.3
8,404 + AO353_00040 0.68 +0.6
8,405 - AO353_00040 0.68 -0.0
8,405 - AO353_00040 0.68 +0.3
8,405 - AO353_00040 0.68 -1.6
8,405 - AO353_00040 0.68 +2.1
8,405 - AO353_00040 0.68 +0.6
8,405 - AO353_00040 0.68 +0.4
8,405 - AO353_00040 0.68 +0.4
8,486 + AO353_00040 0.75 -2.3

Or see this region's nucleotide sequence