Strain Fitness in Shewanella loihica PV-4 around Shew_3765
Experiment: Phosphomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.24 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,482,475 | - | Shew_3764 | 0.19 | +0.4 | |
4,482,589 | - | Shew_3764 | 0.28 | +0.1 | |
4,482,621 | + | Shew_3764 | 0.31 | -0.1 | |
4,482,739 | - | Shew_3764 | 0.40 | -0.2 | |
4,482,790 | + | Shew_3764 | 0.44 | +1.3 | |
4,482,983 | - | Shew_3764 | 0.60 | -0.1 | |
4,483,128 | + | Shew_3764 | 0.72 | +0.0 | |
4,483,281 | + | Shew_3764 | 0.84 | +0.2 | |
4,483,287 | + | Shew_3764 | 0.85 | -0.0 | |
4,483,316 | + | Shew_3764 | 0.87 | +0.1 | |
4,483,414 | - | -1.5 | |||
4,483,526 | + | +0.4 | |||
4,483,718 | + | Shew_3765 | 0.24 | -0.1 | |
4,483,766 | + | Shew_3765 | 0.28 | +2.0 | |
4,483,774 | - | Shew_3765 | 0.29 | +0.2 | |
4,483,774 | - | Shew_3765 | 0.29 | -0.1 | |
4,483,774 | - | Shew_3765 | 0.29 | -0.6 | |
4,483,774 | - | Shew_3765 | 0.29 | +0.1 | |
4,483,774 | - | Shew_3765 | 0.29 | +0.3 | |
4,483,784 | - | Shew_3765 | 0.30 | -1.3 | |
4,484,050 | - | Shew_3765 | 0.56 | +0.9 | |
4,484,318 | - | Shew_3765 | 0.81 | +0.3 | |
4,484,329 | + | Shew_3765 | 0.82 | -0.0 | |
4,484,869 | - | Shew_3766 | 0.12 | +0.1 | |
4,484,893 | - | Shew_3766 | 0.12 | +1.0 | |
4,485,172 | - | Shew_3766 | 0.22 | +0.1 | |
4,485,189 | + | Shew_3766 | 0.22 | +0.3 | |
4,485,438 | - | Shew_3766 | 0.30 | +0.8 |
Or see this region's nucleotide sequence