Strain Fitness in Shewanella loihica PV-4 around Shew_3204
Experiment: Phosphomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.24 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,821,435 | + | Shew_3203 | 0.26 | +1.1 | |
3,821,458 | - | Shew_3203 | 0.28 | -1.9 | |
3,821,574 | + | Shew_3203 | 0.37 | +0.0 | |
3,821,574 | + | Shew_3203 | 0.37 | +0.2 | |
3,821,686 | + | Shew_3203 | 0.46 | +0.1 | |
3,821,689 | - | Shew_3203 | 0.46 | -2.2 | |
3,821,820 | - | Shew_3203 | 0.57 | -3.2 | |
3,822,047 | + | Shew_3203 | 0.75 | +0.0 | |
3,822,055 | - | Shew_3203 | 0.76 | -0.9 | |
3,822,290 | + | -0.7 | |||
3,822,693 | - | Shew_3204 | 0.53 | +0.9 | |
3,822,711 | + | Shew_3204 | 0.56 | -1.2 | |
3,822,719 | - | Shew_3204 | 0.57 | +0.0 | |
3,822,865 | - | Shew_3204 | 0.82 | -0.8 | |
3,823,966 | + | Shew_3206 | 0.14 | +0.3 |
Or see this region's nucleotide sequence