Strain Fitness in Shewanella loihica PV-4 around Shew_2791
Experiment: Phosphomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.24 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,300,486 | + | Shew_2790 | 0.51 | -0.0 | |
3,300,679 | + | Shew_2790 | 0.65 | +0.6 | |
3,301,450 | + | -0.2 | |||
3,301,753 | - | -1.0 | |||
3,302,077 | - | Shew_2791 | 0.18 | +0.7 | |
3,302,077 | - | Shew_2791 | 0.18 | +0.7 | |
3,302,696 | + | Shew_2791 | 0.35 | -1.3 | |
3,302,843 | - | Shew_2791 | 0.39 | +0.8 | |
3,302,985 | + | Shew_2791 | 0.43 | -0.5 | |
3,303,217 | + | Shew_2791 | 0.49 | -0.7 | |
3,303,597 | - | Shew_2791 | 0.60 | -2.4 | |
3,303,771 | + | Shew_2791 | 0.64 | -0.7 | |
3,303,794 | + | Shew_2791 | 0.65 | -0.9 | |
3,303,895 | + | Shew_2791 | 0.68 | +0.2 | |
3,304,104 | - | Shew_2791 | 0.74 | -0.6 | |
3,304,263 | - | Shew_2791 | 0.78 | +0.3 | |
3,304,436 | - | Shew_2791 | 0.83 | -1.3 | |
3,304,555 | + | Shew_2791 | 0.86 | -1.1 | |
3,304,581 | - | Shew_2791 | 0.86 | +0.6 | |
3,304,732 | + | -3.1 | |||
3,305,412 | + | Shew_2792 | 0.15 | +1.0 | |
3,305,910 | - | Shew_2792 | 0.42 | +0.0 |
Or see this region's nucleotide sequence