Strain Fitness in Shewanella loihica PV-4 around Shew_2547
Experiment: Phosphomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.24 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,003,199 | - | Shew_2546 | 0.42 | -0.0 | |
3,003,210 | - | Shew_2546 | 0.43 | -0.4 | |
3,003,425 | + | Shew_2546 | 0.66 | +0.4 | |
3,003,766 | - | -0.6 | |||
3,003,766 | - | -0.8 | |||
3,003,766 | - | -1.3 | |||
3,004,002 | + | +0.5 | |||
3,004,242 | - | Shew_2547 | 0.30 | -0.4 | |
3,004,242 | - | Shew_2547 | 0.30 | -1.3 | |
3,004,394 | + | Shew_2547 | 0.47 | -0.5 | |
3,004,394 | + | Shew_2547 | 0.47 | -0.9 | |
3,004,545 | + | Shew_2547 | 0.65 | -1.8 | |
3,005,117 | + | Shew_2548 | 0.13 | -0.3 | |
3,005,149 | - | Shew_2548 | 0.15 | -0.1 | |
3,005,512 | + | Shew_2548 | 0.33 | +1.1 | |
3,005,515 | - | Shew_2548 | 0.33 | +0.4 | |
3,005,738 | + | Shew_2548 | 0.44 | -1.2 | |
3,005,796 | - | Shew_2548 | 0.47 | -0.5 | |
3,005,798 | + | Shew_2548 | 0.47 | +0.3 |
Or see this region's nucleotide sequence