Experiment: Phosphomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2166 and Shew_2167 are separated by 126 nucleotides Shew_2167 and Shew_2168 are separated by 21 nucleotides Shew_2168 and Shew_2169 are separated by 199 nucleotides Shew_2169 and Shew_2170 are separated by 287 nucleotides
Shew_2166: Shew_2166 - hypothetical protein (RefSeq), at 2,517,223 to 2,521,146
_2166
Shew_2167: Shew_2167 - hypothetical protein (RefSeq), at 2,521,273 to 2,521,473
_2167
Shew_2168: Shew_2168 - hypothetical protein (RefSeq), at 2,521,495 to 2,521,815
_2168
Shew_2169: Shew_2169 - hypothetical protein (RefSeq), at 2,522,015 to 2,522,944
_2169
Shew_2170: Shew_2170 - endonuclease/exonuclease/phosphatase (RefSeq), at 2,523,232 to 2,526,069
_2170
Position (kb)
2522
2523 Strain fitness (log2 ratio)
-1
0
1 at 2521.212 kb on + strand at 2521.306 kb on - strand, within Shew_2167 at 2521.599 kb on + strand, within Shew_2168 at 2521.599 kb on + strand, within Shew_2168 at 2521.705 kb on + strand, within Shew_2168 at 2522.376 kb on + strand, within Shew_2169 at 2522.581 kb on - strand, within Shew_2169 at 2522.754 kb on + strand, within Shew_2169 at 2522.946 kb on + strand at 2523.745 kb on + strand, within Shew_2170 at 2523.893 kb on + strand, within Shew_2170
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.24 mg/ml remove 2,521,212 + +0.7 2,521,306 - Shew_2167 0.16 -0.1 2,521,599 + Shew_2168 0.32 +0.2 2,521,599 + Shew_2168 0.32 +0.0 2,521,705 + Shew_2168 0.65 +0.7 2,522,376 + Shew_2169 0.39 +0.4 2,522,581 - Shew_2169 0.61 -0.1 2,522,754 + Shew_2169 0.79 +1.4 2,522,946 + +0.4 2,523,745 + Shew_2170 0.18 -0.3 2,523,893 + Shew_2170 0.23 +1.1
Or see this region's nucleotide sequence