Strain Fitness in Shewanella loihica PV-4 around Shew_1864

Experiment: Phosphomycin 0.24 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1862 and Shew_1863 overlap by 4 nucleotidesShew_1863 and Shew_1864 are separated by 286 nucleotidesShew_1864 and Shew_1865 are separated by 66 nucleotides Shew_1862: Shew_1862 - succinyl-diaminopimelate desuccinylase (RefSeq), at 2,140,883 to 2,142,013 _1862 Shew_1863: Shew_1863 - arsenate reductase and related (RefSeq), at 2,142,010 to 2,142,354 _1863 Shew_1864: Shew_1864 - glucose-specific PTS system component (RefSeq), at 2,142,641 to 2,143,150 _1864 Shew_1865: Shew_1865 - phosphoenolpyruvate-protein phosphotransferase (RefSeq), at 2,143,217 to 2,144,923 _1865 Position (kb) 2142 2143 2144Strain fitness (log2 ratio) -1 0 1at 2142.647 kb on - strandat 2142.896 kb on + strand, within Shew_1864at 2143.003 kb on - strand, within Shew_1864at 2143.069 kb on + strand, within Shew_1864at 2143.820 kb on - strand, within Shew_1865at 2143.822 kb on + strand, within Shew_1865at 2143.895 kb on + strand, within Shew_1865at 2144.053 kb on - strand, within Shew_1865

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.24 mg/ml
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2,142,647 - +0.4
2,142,896 + Shew_1864 0.50 -0.9
2,143,003 - Shew_1864 0.71 -1.5
2,143,069 + Shew_1864 0.84 -0.7
2,143,820 - Shew_1865 0.35 +0.8
2,143,822 + Shew_1865 0.35 +0.4
2,143,895 + Shew_1865 0.40 +1.1
2,144,053 - Shew_1865 0.49 -0.3

Or see this region's nucleotide sequence