Strain Fitness in Shewanella loihica PV-4 around Shew_1761
Experiment: Phosphomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.24 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,012,063 | - | Shew_1760 | 0.75 | +1.2 | |
2,012,212 | - | Shew_1760 | 0.81 | -0.1 | |
2,012,950 | - | Shew_1761 | 0.15 | +1.0 | |
2,013,313 | + | Shew_1761 | 0.36 | +0.4 | |
2,013,389 | - | Shew_1761 | 0.40 | +1.0 | |
2,013,414 | + | Shew_1761 | 0.41 | -0.3 | |
2,013,843 | - | Shew_1761 | 0.65 | +0.4 | |
2,013,919 | - | Shew_1761 | 0.70 | -0.8 | |
2,013,965 | - | Shew_1761 | 0.72 | +0.2 | |
2,013,980 | + | Shew_1761 | 0.73 | -1.0 | |
2,014,472 | - | +0.2 | |||
2,014,705 | + | Shew_1762 | 0.47 | -0.1 | |
2,014,787 | - | Shew_1762 | 0.61 | -0.3 | |
2,015,416 | - | Shew_1763 | 0.60 | +0.1 | |
2,015,416 | - | Shew_1763 | 0.60 | +0.9 | |
2,015,423 | + | Shew_1763 | 0.61 | +0.5 |
Or see this region's nucleotide sequence