Strain Fitness in Shewanella loihica PV-4 around Shew_1641

Experiment: Phosphomycin 0.24 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1639 and Shew_1640 are separated by 1 nucleotidesShew_1640 and Shew_1641 are separated by 235 nucleotidesShew_1641 and Shew_1642 are separated by 499 nucleotides Shew_1639: Shew_1639 - tetraacyldisaccharide 4'-kinase (RefSeq), at 1,876,708 to 1,877,724 _1639 Shew_1640: Shew_1640 - hypothetical protein (RefSeq), at 1,877,726 to 1,877,905 _1640 Shew_1641: Shew_1641 - Mn2+-dependent serine/threonine protein kinase (RefSeq), at 1,878,141 to 1,878,860 _1641 Shew_1642: Shew_1642 - peptidase M11, gametolysin (RefSeq), at 1,879,360 to 1,882,428 _1642 Position (kb) 1878 1879Strain fitness (log2 ratio) -1 0 1 2at 1877.937 kb on + strandat 1878.841 kb on + strandat 1878.841 kb on + strandat 1879.311 kb on - strandat 1879.417 kb on + strandat 1879.489 kb on + strandat 1879.605 kb on - strandat 1879.620 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.24 mg/ml
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1,877,937 + -1.1
1,878,841 + +2.2
1,878,841 + +0.1
1,879,311 - -1.4
1,879,417 + +0.5
1,879,489 + -0.4
1,879,605 - +2.0
1,879,620 + +0.5

Or see this region's nucleotide sequence