Strain Fitness in Shewanella loihica PV-4 around Shew_1374
Experiment: Phosphomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.24 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,583,828 | + | fliM | Shew_1373 | 0.49 | -1.4 |
1,584,333 | - | -3.2 | |||
1,584,397 | - | -0.3 | |||
1,584,547 | + | fliN | Shew_1374 | 0.43 | -1.4 |
1,584,547 | + | fliN | Shew_1374 | 0.43 | -1.2 |
1,584,604 | + | fliN | Shew_1374 | 0.58 | -1.8 |
1,584,854 | - | Shew_1375 | 0.21 | -0.2 | |
1,584,959 | + | Shew_1375 | 0.49 | -0.3 | |
1,585,373 | - | fliP | Shew_1376 | 0.29 | +0.2 |
1,585,514 | - | fliP | Shew_1376 | 0.48 | -1.1 |
1,585,542 | + | fliP | Shew_1376 | 0.51 | -0.4 |
1,585,603 | - | fliP | Shew_1376 | 0.59 | -1.9 |
Or see this region's nucleotide sequence