Strain Fitness in Shewanella loihica PV-4 around Shew_1373

Experiment: Phosphomycin 0.24 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1371 and fliL are separated by 99 nucleotidesfliL and fliM are separated by 42 nucleotidesfliM and fliN are separated by 25 nucleotidesfliN and Shew_1375 are separated by 9 nucleotidesShew_1375 and fliP overlap by 4 nucleotides Shew_1371: Shew_1371 - flagellar hook-length control protein (RefSeq), at 1,580,960 to 1,582,666 _1371 Shew_1372: fliL - flagellar basal body-associated protein FliL (RefSeq), at 1,582,766 to 1,583,287 fliL Shew_1373: fliM - flagellar motor switch protein FliM (RefSeq), at 1,583,330 to 1,584,355 fliM Shew_1374: fliN - flagellar motor switch protein (RefSeq), at 1,584,381 to 1,584,764 fliN Shew_1375: Shew_1375 - flagellar biosynthesis protein, FliO (RefSeq), at 1,584,774 to 1,585,151 _1375 Shew_1376: fliP - flagellar biosynthesis protein FliP (RefSeq), at 1,585,148 to 1,585,915 fliP Position (kb) 1583 1584 1585Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1583.140 kb on - strand, within fliLat 1583.258 kb on + strandat 1583.368 kb on + strandat 1583.376 kb on - strandat 1583.828 kb on + strand, within fliMat 1584.333 kb on - strandat 1584.397 kb on - strandat 1584.547 kb on + strand, within fliNat 1584.547 kb on + strand, within fliNat 1584.604 kb on + strand, within fliNat 1584.854 kb on - strand, within Shew_1375at 1584.959 kb on + strand, within Shew_1375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.24 mg/ml
remove
1,583,140 - fliL Shew_1372 0.72 -2.5
1,583,258 + +0.1
1,583,368 + -3.9
1,583,376 - -2.4
1,583,828 + fliM Shew_1373 0.49 -1.4
1,584,333 - -3.2
1,584,397 - -0.3
1,584,547 + fliN Shew_1374 0.43 -1.4
1,584,547 + fliN Shew_1374 0.43 -1.2
1,584,604 + fliN Shew_1374 0.58 -1.8
1,584,854 - Shew_1375 0.21 -0.2
1,584,959 + Shew_1375 0.49 -0.3

Or see this region's nucleotide sequence