Experiment: Phosphomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1197 and Shew_1198 are separated by 97 nucleotides Shew_1198 and Shew_1199 are separated by 3 nucleotides Shew_1199 and Shew_1200 overlap by 8 nucleotides
Shew_1197: Shew_1197 - auxin efflux carrier (RefSeq), at 1,389,101 to 1,390,069
_1197
Shew_1198: Shew_1198 - hypothetical protein (RefSeq), at 1,390,167 to 1,390,361
_1198
Shew_1199: Shew_1199 - hypothetical protein (RefSeq), at 1,390,365 to 1,390,967
_1199
Shew_1200: Shew_1200 - hybrid sensory histidine kinase BarA (RefSeq), at 1,390,960 to 1,393,761
_1200
Position (kb) 1390
1391 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1389.420 kb on + strand, within Shew_1197 at 1389.425 kb on + strand, within Shew_1197 at 1389.514 kb on - strand, within Shew_1197 at 1389.623 kb on - strand, within Shew_1197 at 1389.828 kb on + strand, within Shew_1197 at 1390.127 kb on + strand at 1390.648 kb on + strand, within Shew_1199 at 1390.670 kb on - strand, within Shew_1199 at 1390.979 kb on + strand at 1391.031 kb on + strand at 1391.937 kb on + strand, within Shew_1200 at 1391.937 kb on + strand, within Shew_1200
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.24 mg/ml remove 1,389,420 + Shew_1197 0.33 -0.0 1,389,425 + Shew_1197 0.33 -0.4 1,389,514 - Shew_1197 0.43 -1.1 1,389,623 - Shew_1197 0.54 -2.9 1,389,828 + Shew_1197 0.75 -0.6 1,390,127 + +0.5 1,390,648 + Shew_1199 0.47 +1.5 1,390,670 - Shew_1199 0.51 +2.4 1,390,979 + +2.0 1,391,031 + -0.2 1,391,937 + Shew_1200 0.35 -0.2 1,391,937 + Shew_1200 0.35 +4.3
Or see this region's nucleotide sequence