Experiment: Phosphomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1094 and Shew_1095 are separated by 135 nucleotides Shew_1095 and rpsT are separated by 221 nucleotides rpsT and Shew_1097 are separated by 247 nucleotides
Shew_1094: Shew_1094 - peptidase M28 (RefSeq), at 1,261,904 to 1,263,310
_1094
Shew_1095: Shew_1095 - ArsR family transcriptional regulator (RefSeq), at 1,263,446 to 1,263,742
_1095
Shew_1096: rpsT - 30S ribosomal protein S20 (RefSeq), at 1,263,964 to 1,264,230
rpsT
Shew_1097: Shew_1097 - integral membrane protein MviN (RefSeq), at 1,264,478 to 1,266,037
_1097
Position (kb)
1263
1264 Strain fitness (log2 ratio)
-2
-1
0
1 at 1262.705 kb on + strand, within Shew_1094 at 1262.713 kb on - strand, within Shew_1094 at 1262.747 kb on + strand, within Shew_1094 at 1263.011 kb on - strand, within Shew_1094 at 1263.094 kb on + strand, within Shew_1094 at 1263.150 kb on - strand, within Shew_1094 at 1263.199 kb on + strand at 1263.450 kb on + strand at 1263.499 kb on + strand, within Shew_1095 at 1263.621 kb on - strand, within Shew_1095 at 1264.355 kb on - strand at 1264.355 kb on - strand at 1264.355 kb on - strand at 1264.371 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.24 mg/ml remove 1,262,705 + Shew_1094 0.57 +0.6 1,262,713 - Shew_1094 0.57 -0.2 1,262,747 + Shew_1094 0.60 -0.7 1,263,011 - Shew_1094 0.79 -0.1 1,263,094 + Shew_1094 0.85 +1.7 1,263,150 - Shew_1094 0.89 -0.4 1,263,199 + -0.5 1,263,450 + -2.3 1,263,499 + Shew_1095 0.18 -0.7 1,263,621 - Shew_1095 0.59 -0.3 1,264,355 - +0.3 1,264,355 - -0.8 1,264,355 - +0.4 1,264,371 + +0.9
Or see this region's nucleotide sequence