Strain Fitness in Shewanella loihica PV-4 around Shew_1090

Experiment: Phosphomycin 0.24 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1089 and Shew_1090 are separated by 273 nucleotidesShew_1090 and Shew_1091 are separated by 247 nucleotides Shew_1089: Shew_1089 - transaldolase B (RefSeq), at 1,253,967 to 1,254,923 _1089 Shew_1090: Shew_1090 - OmpA/MotB domain-containing protein (RefSeq), at 1,255,197 to 1,256,300 _1090 Shew_1091: Shew_1091 - putative phosphoketolase (RefSeq), at 1,256,548 to 1,258,914 _1091 Position (kb) 1255 1256 1257Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1256.139 kb on + strand, within Shew_1090at 1256.153 kb on + strand, within Shew_1090at 1256.163 kb on + strand, within Shew_1090at 1256.405 kb on + strandat 1256.405 kb on + strandat 1256.737 kb on + strandat 1256.893 kb on - strand, within Shew_1091at 1257.024 kb on - strand, within Shew_1091at 1257.176 kb on + strand, within Shew_1091at 1257.210 kb on - strand, within Shew_1091

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.24 mg/ml
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1,256,139 + Shew_1090 0.85 +3.2
1,256,153 + Shew_1090 0.87 -0.2
1,256,163 + Shew_1090 0.88 +0.8
1,256,405 + +2.6
1,256,405 + +0.4
1,256,737 + -0.4
1,256,893 - Shew_1091 0.15 +0.5
1,257,024 - Shew_1091 0.20 -2.7
1,257,176 + Shew_1091 0.27 -0.8
1,257,210 - Shew_1091 0.28 -0.8

Or see this region's nucleotide sequence