Strain Fitness in Shewanella loihica PV-4 around Shew_1032

Experiment: Phosphomycin 0.24 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phosphomycin 0.24 mg/ml
1,190,009	+	gltD	Shew_1031	0.36	+0.8
1,190,009	+	gltD	Shew_1031	0.36	+0.6
1,190,017	-	gltD	Shew_1031	0.37	+0.3
1,190,017	-	gltD	Shew_1031	0.37	+0.6
1,190,065	+	gltD	Shew_1031	0.40	-0.3
1,190,090	+	gltD	Shew_1031	0.42	+0.4
1,190,266	+	gltD	Shew_1031	0.55	+0.1
1,190,327	-	gltD	Shew_1031	0.59	+1.4
1,190,706	-	gltD	Shew_1031	0.86	+1.4
1,190,745	+	gltD	Shew_1031	0.89	+1.7
1,190,745	+	gltD	Shew_1031	0.89	-0.0
1,190,798	-				+1.1
1,191,083	+				+0.3
1,191,091	-				+0.9
1,191,091	-				+0.5
1,191,251	+				+0.3
1,191,318	-				+0.3
1,191,352	-				+0.5
1,191,391	-	gltB	Shew_1032	0.11	+0.9
1,191,457	+	gltB	Shew_1032	0.12	-0.1
1,191,535	+	gltB	Shew_1032	0.14	-0.4
1,191,755	-	gltB	Shew_1032	0.19	+0.1
1,191,950	+	gltB	Shew_1032	0.23	+0.3
1,192,182	+	gltB	Shew_1032	0.29	+0.3
1,192,214	+	gltB	Shew_1032	0.29	+0.0
1,192,342	+	gltB	Shew_1032	0.32	-0.9
1,192,344	-	gltB	Shew_1032	0.32	-0.2
1,192,487	+	gltB	Shew_1032	0.35	+0.8
1,192,589	+	gltB	Shew_1032	0.38	-0.5
1,192,749	+	gltB	Shew_1032	0.41	+0.0
1,192,933	-	gltB	Shew_1032	0.45	+0.2
1,192,984	+	gltB	Shew_1032	0.47	-0.5
1,193,116	+	gltB	Shew_1032	0.50	+0.3
1,193,233	-	gltB	Shew_1032	0.52	-1.9
1,193,272	+	gltB	Shew_1032	0.53	-0.5
1,193,344	-	gltB	Shew_1032	0.55	+0.7
1,193,464	+	gltB	Shew_1032	0.57	-0.8
1,193,527	-	gltB	Shew_1032	0.59	-0.1
1,193,615	-	gltB	Shew_1032	0.61	+0.7
1,194,030	-	gltB	Shew_1032	0.70	+0.3
1,194,068	-	gltB	Shew_1032	0.71	+0.8
1,194,313	+	gltB	Shew_1032	0.76	+0.8
1,194,331	+	gltB	Shew_1032	0.77	+0.2
1,194,403	-	gltB	Shew_1032	0.78	+0.4
1,194,441	+	gltB	Shew_1032	0.79	+0.3
1,194,471	-	gltB	Shew_1032	0.80	+1.6
1,194,519	+	gltB	Shew_1032	0.81	+1.2
1,194,851	+	gltB	Shew_1032	0.89	-1.1
1,194,859	-	gltB	Shew_1032	0.89	+0.1
1,194,939	-				-2.1
1,194,984	+				-1.5
1,195,706	+				-2.1
1,195,860	+				+0.3
1,195,977	+		Shew_1033	0.19	+0.0
1,196,029	+		Shew_1033	0.24	-0.2
1,196,071	+		Shew_1033	0.28	-2.8
1,196,126	-		Shew_1033	0.34	-1.9
1,196,178	+		Shew_1033	0.39	-0.8
1,196,267	-		Shew_1033	0.48	+0.4
1,196,307	+		Shew_1033	0.52	-1.5