Strain Fitness in Shewanella loihica PV-4 around Shew_0994

Experiment: Phosphomycin 0.24 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0993 and Shew_0994 are separated by 231 nucleotidesShew_0994 and Shew_0995 are separated by 509 nucleotides Shew_0993: Shew_0993 - Eco57I restriction endonuclease (RefSeq), at 1,148,846 to 1,150,633 _0993 Shew_0994: Shew_0994 - KfrAs (RefSeq), at 1,150,865 to 1,151,482 _0994 Shew_0995: Shew_0995 - phage integrase family protein (RefSeq), at 1,151,992 to 1,152,966 _0995 Position (kb) 1150 1151 1152Strain fitness (log2 ratio) -1 0 1at 1150.522 kb on + strandat 1151.010 kb on + strand, within Shew_0994at 1151.134 kb on + strand, within Shew_0994at 1151.134 kb on + strand, within Shew_0994at 1151.386 kb on + strand, within Shew_0994at 1151.630 kb on - strandat 1152.439 kb on - strand, within Shew_0995at 1152.440 kb on + strand, within Shew_0995at 1152.462 kb on - strand, within Shew_0995

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.24 mg/ml
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1,150,522 + +1.0
1,151,010 + Shew_0994 0.23 +0.2
1,151,134 + Shew_0994 0.44 +0.9
1,151,134 + Shew_0994 0.44 +1.3
1,151,386 + Shew_0994 0.84 +0.5
1,151,630 - +0.3
1,152,439 - Shew_0995 0.46 -1.7
1,152,440 + Shew_0995 0.46 +0.2
1,152,462 - Shew_0995 0.48 -1.7

Or see this region's nucleotide sequence