Experiment: Phosphomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0797 and Shew_0798 are separated by 554 nucleotides Shew_0798 and Shew_0799 are separated by 304 nucleotides Shew_0799 and Shew_0800 are separated by 33 nucleotides
Shew_0797: Shew_0797 - hypothetical protein (RefSeq), at 909,014 to 910,432
_0797
Shew_0798: Shew_0798 - hypothetical protein (RefSeq), at 910,987 to 911,424
_0798
Shew_0799: Shew_0799 - MarR family transcriptional regulator (RefSeq), at 911,729 to 912,214
_0799
Shew_0800: Shew_0800 - FAD dependent oxidoreductase (RefSeq), at 912,248 to 913,489
_0800
Position (kb)
910
911
912 Strain fitness (log2 ratio)
-1
0
1
2 at 910.036 kb on - strand, within Shew_0797 at 910.137 kb on + strand, within Shew_0797 at 910.137 kb on + strand, within Shew_0797 at 910.145 kb on - strand, within Shew_0797 at 910.589 kb on + strand at 910.691 kb on - strand at 910.910 kb on + strand at 911.039 kb on + strand, within Shew_0798 at 911.147 kb on + strand, within Shew_0798 at 911.155 kb on - strand, within Shew_0798 at 911.155 kb on - strand, within Shew_0798 at 911.252 kb on - strand, within Shew_0798 at 911.575 kb on - strand at 911.705 kb on - strand at 912.110 kb on + strand, within Shew_0799 at 912.211 kb on - strand at 912.330 kb on + strand at 912.406 kb on + strand, within Shew_0800
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.24 mg/ml remove 910,036 - Shew_0797 0.72 +0.2 910,137 + Shew_0797 0.79 -0.3 910,137 + Shew_0797 0.79 +0.3 910,145 - Shew_0797 0.80 +0.2 910,589 + +0.7 910,691 - +1.0 910,910 + +1.1 911,039 + Shew_0798 0.12 +0.6 911,147 + Shew_0798 0.37 +0.8 911,155 - Shew_0798 0.38 +0.3 911,155 - Shew_0798 0.38 +1.0 911,252 - Shew_0798 0.61 +1.9 911,575 - +0.0 911,705 - +2.0 912,110 + Shew_0799 0.78 +2.6 912,211 - +1.7 912,330 + +1.0 912,406 + Shew_0800 0.13 +0.2
Or see this region's nucleotide sequence