Experiment: Phosphomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0631 and Shew_0632 are separated by 86 nucleotides Shew_0632 and Shew_0633 are separated by 67 nucleotides
Shew_0631: Shew_0631 - AFG1 family ATPase (RefSeq), at 717,533 to 718,699
_0631
Shew_0632: Shew_0632 - OmpA/MotB domain-containing protein (RefSeq), at 718,786 to 720,231
_0632
Shew_0633: Shew_0633 - hypothetical protein (RefSeq), at 720,299 to 721,741
_0633
Position (kb) 718
719
720
721 Strain fitness (log2 ratio) -2
-1
0
1 at 718.228 kb on + strand, within Shew_0631 at 718.323 kb on + strand, within Shew_0631 at 718.383 kb on + strand, within Shew_0631 at 718.383 kb on + strand, within Shew_0631 at 718.543 kb on + strand, within Shew_0631 at 718.551 kb on - strand, within Shew_0631 at 718.849 kb on - strand at 718.897 kb on - strand at 718.897 kb on - strand at 718.943 kb on + strand, within Shew_0632 at 719.000 kb on - strand, within Shew_0632 at 719.214 kb on + strand, within Shew_0632 at 719.214 kb on + strand, within Shew_0632 at 719.214 kb on + strand, within Shew_0632 at 719.222 kb on - strand, within Shew_0632 at 719.343 kb on - strand, within Shew_0632 at 719.388 kb on - strand, within Shew_0632 at 719.432 kb on + strand, within Shew_0632 at 719.440 kb on - strand, within Shew_0632 at 719.462 kb on + strand, within Shew_0632 at 719.506 kb on - strand, within Shew_0632 at 719.519 kb on + strand, within Shew_0632 at 719.521 kb on - strand, within Shew_0632 at 719.839 kb on - strand, within Shew_0632 at 720.085 kb on + strand, within Shew_0632 at 720.163 kb on - strand at 720.175 kb on + strand at 720.188 kb on - strand at 720.188 kb on - strand at 720.287 kb on + strand at 720.369 kb on - strand at 720.374 kb on - strand at 720.374 kb on - strand at 720.380 kb on + strand at 720.387 kb on + strand at 720.395 kb on - strand at 720.553 kb on + strand, within Shew_0633 at 720.590 kb on - strand, within Shew_0633 at 720.644 kb on - strand, within Shew_0633 at 720.693 kb on - strand, within Shew_0633 at 720.727 kb on - strand, within Shew_0633 at 720.727 kb on - strand, within Shew_0633 at 720.727 kb on - strand, within Shew_0633 at 720.999 kb on - strand, within Shew_0633 at 721.000 kb on + strand, within Shew_0633
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.24 mg/ml remove 718,228 + Shew_0631 0.60 +0.4 718,323 + Shew_0631 0.68 +0.1 718,383 + Shew_0631 0.73 -1.8 718,383 + Shew_0631 0.73 -0.0 718,543 + Shew_0631 0.87 -1.0 718,551 - Shew_0631 0.87 -0.4 718,849 - -0.6 718,897 - +0.4 718,897 - +0.3 718,943 + Shew_0632 0.11 -0.5 719,000 - Shew_0632 0.15 +0.3 719,214 + Shew_0632 0.30 +0.8 719,214 + Shew_0632 0.30 -0.2 719,214 + Shew_0632 0.30 -0.8 719,222 - Shew_0632 0.30 -0.1 719,343 - Shew_0632 0.39 -1.4 719,388 - Shew_0632 0.42 -0.1 719,432 + Shew_0632 0.45 +0.6 719,440 - Shew_0632 0.45 +0.3 719,462 + Shew_0632 0.47 +0.3 719,506 - Shew_0632 0.50 -0.7 719,519 + Shew_0632 0.51 +0.4 719,521 - Shew_0632 0.51 +0.3 719,839 - Shew_0632 0.73 +0.3 720,085 + Shew_0632 0.90 -0.6 720,163 - +0.4 720,175 + -0.4 720,188 - -0.4 720,188 - -0.4 720,287 + -0.6 720,369 - -0.6 720,374 - -1.2 720,374 - +0.9 720,380 + +0.4 720,387 + -0.4 720,395 - -0.7 720,553 + Shew_0633 0.18 +0.4 720,590 - Shew_0633 0.20 +0.6 720,644 - Shew_0633 0.24 -0.5 720,693 - Shew_0633 0.27 +0.2 720,727 - Shew_0633 0.30 +0.9 720,727 - Shew_0633 0.30 +0.4 720,727 - Shew_0633 0.30 +0.1 720,999 - Shew_0633 0.49 +0.0 721,000 + Shew_0633 0.49 +0.1
Or see this region's nucleotide sequence