Strain Fitness in Shewanella loihica PV-4 around Shew_0592

Experiment: Phosphomycin 0.24 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0591 and Shew_0592 are separated by 56 nucleotidesShew_0592 and Shew_0593 are separated by 67 nucleotides Shew_0591: Shew_0591 - glucose-methanol-choline oxidoreductase (RefSeq), at 667,823 to 669,412 _0591 Shew_0592: Shew_0592 - hypothetical protein (RefSeq), at 669,469 to 669,918 _0592 Shew_0593: Shew_0593 - ABC transporter-related protein (RefSeq), at 669,986 to 671,896 _0593 Position (kb) 669 670Strain fitness (log2 ratio) -3 -2 -1 0 1at 668.500 kb on + strand, within Shew_0591at 668.768 kb on - strand, within Shew_0591at 668.808 kb on + strand, within Shew_0591at 668.887 kb on + strand, within Shew_0591at 669.071 kb on + strand, within Shew_0591at 669.247 kb on - strand, within Shew_0591at 669.341 kb on - strandat 669.525 kb on + strand, within Shew_0592at 669.596 kb on - strand, within Shew_0592at 669.658 kb on - strand, within Shew_0592at 669.933 kb on - strandat 669.953 kb on + strandat 669.966 kb on - strandat 670.058 kb on - strandat 670.069 kb on + strandat 670.092 kb on + strandat 670.125 kb on + strandat 670.554 kb on - strand, within Shew_0593at 670.700 kb on + strand, within Shew_0593at 670.806 kb on + strand, within Shew_0593at 670.814 kb on - strand, within Shew_0593at 670.814 kb on - strand, within Shew_0593

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.24 mg/ml
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668,500 + Shew_0591 0.43 -1.8
668,768 - Shew_0591 0.59 +0.3
668,808 + Shew_0591 0.62 -0.7
668,887 + Shew_0591 0.67 +0.9
669,071 + Shew_0591 0.78 +0.2
669,247 - Shew_0591 0.90 -0.6
669,341 - -2.8
669,525 + Shew_0592 0.12 -0.9
669,596 - Shew_0592 0.28 -1.4
669,658 - Shew_0592 0.42 +0.6
669,933 - +0.3
669,953 + +0.2
669,966 - -0.0
670,058 - -0.6
670,069 + +0.8
670,092 + -1.6
670,125 + -2.4
670,554 - Shew_0593 0.30 +0.6
670,700 + Shew_0593 0.37 -0.2
670,806 + Shew_0593 0.43 -0.8
670,814 - Shew_0593 0.43 +0.2
670,814 - Shew_0593 0.43 -0.0

Or see this region's nucleotide sequence